Equivalence class NR_all_96269.13 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4KZZ|1|j (rep) | Transfer RNA | initiator Met-RNA-i, mRNA | Homo sapiens | Eukarya | RF00005 | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-ray diffraction | 7.03 | 2013-07-24 |
| 2 | 6ZP4|1|1 | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | Electron microscopy | 2.9 | 2020-07-29 |
| 3 | 6QZP|1|S6 | Transfer RNA | E site tRNA (75-MER) | Homo sapiens | Eukarya | RF00005 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 4 | 7QVP|1|B5 | Transfer RNA | mRNA, tRNA P/E | Homo sapiens | Eukarya | RF00005 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
| 5 | 8BTR|1|u | Transfer RNA | mRNA, tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF00005 | Giardia Ribosome in PRE-T Hybrid State (D2) | Electron microscopy | 3.25 | 2023-03-22 |
| 6 | 8BTR|1|v | Transfer RNA | mRNA, tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF00005 | Giardia Ribosome in PRE-T Hybrid State (D2) | Electron microscopy | 3.25 | 2023-03-22 |
| 7 | 8BSI|1|Lu | Transfer RNA | E-site tRNA | Giardia intestinalis | Eukarya | RF00005 | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | Electron microscopy | 3.4 | 2023-03-15 |
| 8 | 7A09|1|f | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | Electron microscopy | 3.5 | 2020-10-14 |
| 9 | 5T2C|1|An | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | Electron microscopy | 3.6 | 2017-01-25 |
| 10 | 6Y57|1|B4 | Transfer RNA | mRNA, P/E tRNA | Homo sapiens | Eukarya | RF00005 | Structure of human ribosome in hybrid-PRE state | Electron microscopy | 3.5 | 2020-04-15 |
| 11 | 4UG0|1|S6 | Transfer RNA | HUMAN INITIATOR MET-TRNA-I | Homo sapiens | Eukarya | RF00005 | STRUCTURE OF THE HUMAN 80S RIBOSOME | Electron microscopy | 3.6 | 2015-06-10 |
| 12 | 8BR8|1|Lu | Transfer RNA | E-site tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF00005 | Giardia ribosome in POST-T state (A1) | Electron microscopy | 3.35 | 2023-03-15 |
| 13 | 8BTD|1|u | Transfer RNA | mRNA, tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF00005 | Giardia Ribosome in PRE-T Hybrid State (D1) | Electron microscopy | 4.9 | 2023-03-22 |
| 14 | 8BTD|1|v | Transfer RNA | mRNA, tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF00005 | Giardia Ribosome in PRE-T Hybrid State (D1) | Electron microscopy | 4.9 | 2023-03-22 |
| 15 | 4V6X|1|BC | Transfer RNA | E-tRNA | Homo sapiens | Eukarya | RF00005 | Structure of the human 80S ribosome | Electron microscopy | 5 | 2014-07-09 |
| 16 | 6FEC|1|N | Transfer RNA | Messenger RNA (26-MER), Transfer RNA (75-MER) | Homo sapiens | Eukarya | RF00005 | Human cap-dependent 48S pre-initiation complex | Electron microscopy | 6.3 | 2018-03-14 |
| 17 | 8BSJ|1|v | Transfer RNA | mRNA, tRNA | Giardia intestinalis | Eukarya | RF00005 | Giardia Ribosome in PRE-T Classical State (C) | Electron microscopy | 6.49 | 2023-03-22 |
| 18 | 8BSJ|1|u | Transfer RNA | mRNA, tRNA | Giardia intestinalis | Eukarya | RF00005 | Giardia Ribosome in PRE-T Classical State (C) | Electron microscopy | 6.49 | 2023-03-22 |
Release history
| Release | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_96269.13 | NR_all_96269.12 | 3.275 | (12) 4KZZ|1|j, 4UG0|1|S6, 4V6X|1|BC, 5T2C|1|An, 6FEC|1|N, 6QZP|1|S6, 6Y57|1|B4, 6ZP4|1|1, 7A09|1|f, 7QVP|1|B5, 8BR8|1|Lu, 8BSI|1|Lu | (6) 8BSJ|1|u, 8BSJ|1|v, 8BTD|1|u, 8BTD|1|v, 8BTR|1|u, 8BTR|1|v | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_96269.13 | NR_all_96269.14 | 3.305 | (18) 4KZZ|1|j, 4UG0|1|S6, 4V6X|1|BC, 5T2C|1|An, 6FEC|1|N, 6QZP|1|S6, 6Y57|1|B4, 6ZP4|1|1, 7A09|1|f, 7QVP|1|B5, 8BR8|1|Lu, 8BSI|1|Lu, 8BSJ|1|u, 8BSJ|1|v, 8BTD|1|u, 8BTD|1|v, 8BTR|1|u, 8BTR|1|v | (0) | (1) 8PPL|1|Iw |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6QZP|1|S6 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 75 | |
| 2 | 4UG0|1|S6 | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 75 | |
| 3 | 5T2C|1|An | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 75 | |
| 4 | 8BSJ|1|u | Giardia Ribosome in PRE-T Classical State (C) | ELECTRON MICROSCOPY | 6.49 | 75 | |
| 5 | 8BR8|1|Lu | Giardia ribosome in POST-T state (A1) | ELECTRON MICROSCOPY | 3.35 | 57 | |
| 6 | 8BSI|1|Lu | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | ELECTRON MICROSCOPY | 3.4 | 75 | |
| 7 | 8BTD|1|u | Giardia Ribosome in PRE-T Hybrid State (D1) | ELECTRON MICROSCOPY | 4.9 | 75 | |
| 8 | 8BTR|1|u | Giardia Ribosome in PRE-T Hybrid State (D2) | ELECTRON MICROSCOPY | 3.25 | 75 | |
| 9 | 7QVP|1|B5 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 75 | |
| 10 | 6Y57|1|B4 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 75 | |
| 11 | 4V6X|1|BC | Structure of the human 80S ribosome | ELECTRON MICROSCOPY | 5 | 75 | |
| 12 | 6FEC|1|N | Human cap-dependent 48S pre-initiation complex | ELECTRON MICROSCOPY | 6.3 | 75 | |
| 13 | 6ZP4|1|1 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | ELECTRON MICROSCOPY | 2.9 | 75 | |
| 14 | 7A09|1|f | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | ELECTRON MICROSCOPY | 3.5 | 75 | |
| 15 | 4KZZ|1|j | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 75 | |
| 16 | 8BSJ|1|v | Giardia Ribosome in PRE-T Classical State (C) | ELECTRON MICROSCOPY | 6.49 | 75 | |
| 17 | 8BTR|1|v | Giardia Ribosome in PRE-T Hybrid State (D2) | ELECTRON MICROSCOPY | 3.25 | 75 | |
| 18 | 8BTD|1|v | Giardia Ribosome in PRE-T Hybrid State (D1) | ELECTRON MICROSCOPY | 4.9 | 75 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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