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6GB2 Summary

View in PDB or NAKB
Circular interaction diagram
Structure title
Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
Authors
Release date
2018-08-08
Experimental technique
ELECTRON MICROSCOPY
Resolution
3.2 Å
Chains
3 RNA chains from Homo sapiens, Sus scrofa
59 other chains
Nucleic acid compounds
P-site fMet-tRNAMet, mitochondrial, 16S ribosomal RNA, mitochondrial, CP tRNAPhe, mitochondrial
Other compounds
Mitochondrial ribosomal protein L27, Mitochondrial ribosomal protein L28, Mitochondrial ribosomal protein L47, 'Mitochondrial ribosomal protein L30, 'Mitochondrial ribosomal protein L55, Mitochondrial ribosomal protein L32, Mitochondrial ribosomal protein L33, Mitochondrial ribosomal protein L34, Mitochondrial ribosomal protein L35, Ribosomal protein, Translation initiation factor IF-2, mitochondrial, Mitochondrial ribosomal protein L2, ICT1, Mitochondrial ribosomal protein L4, Mitochondrial ribosomal protein L9, Mitochondrial ribosomal protein L10, Mitochondrial ribosomal protein L11, Mitochondrial ribosomal protein L12, Mitochondrial ribosomal protein L13, Mitochondrial ribosomal protein L14, Mitochondrial ribosomal protein L15, Mitochondrial ribosomal protein L16, Mitochondrial ribosomal protein L17, Mitochondrial ribosomal protein L18, Mitochondrial ribosomal protein L19, Mitochondrial ribosomal protein L20, Mitochondrial ribosomal protein L21, Mitochondrial ribosomal protein L22, Mitochondrial ribosomal protein L23, Mitochondrial ribosomal protein L24, Mitochondrial ribosomal protein L37, Mitochondrial ribosomal protein L38, Mitochondrial ribosomal protein L39, Mitochondrial ribosomal protein L40, Mitochondrial ribosomal protein L41, Mitochondrial ribosomal protein L42, Mitochondrial ribosomal protein L43, Mitochondrial ribosomal protein L44, Mitochondrial ribosomal protein L45, Mitochondrial ribosomal protein L46, Mitochondrial ribosomal protein L48, Mrpl34, Mitochondrial ribosomal protein L50, Mitochondrial ribosomal protein L51, Mitochondrial ribosomal protein L52, mL53, MRPL53, Uncharacterized protein, Mitochondrial ribosomal protein L57, Mitochondrial ribosomal protein L58, 'Mitochondrial ribosomal protein L59, mL65, MRPS30, Mitochondrial ribosomal protein S18A, unassigned secondary structure elements, Mitochondrial ribosomal protein L12, Mitochondrial ribosomal protein L12, Mitochondrial ribosomal protein L12, Mitochondrial ribosomal protein L12, Mitochondrial ribosomal protein L12, Mitochondrial ribosomal protein L12

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 6GB2 contains:
  • 47 hairpin loops from 0 motif groups
  • 62 internal loops from 0 motif groups
  • 22 junction loops from 0 motif groups
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3D Redundancy

6GB2 has chains which belong to the following equivalence classes in the current representative set:

Similar structures

9OLF 9PGL 9PGF 9UWH 9PG8 9PGI 6YDP 9PS7 9PGM 9PSI 9PRX 9PRQ 9PRD 8OIR 9HFO 7NQH 7NQL 7PO2 6GAZ 8OIP 8OIN 8OIT 8OIQ 6GAW 6YDW 8QRN 8OIS
Structures from NR_all_41135.1
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