Query 511bd2ca75391 finished in less than a minute
Unaligned nucleotides are translucent. Right click to view Jmol menu. More HelpQuery summary
- Molecule 1
- PDB id: 2qbg, Chains: A, Nucleotides: all
- Molecule 2
- PDB id: 3U5H, Chains: 7, Nucleotides: all
- Iteration 1
- d = 0.5, p = 2, β = 60
- Iteration 2
- d = 0.5, p = 10, β = 20
Local geometric similarity
Blue (low geometric discrepancy) indicates high 3D similarity.
Red (high geometric discrepancy) indicates low 3D similarity.
Bar Diagram Help
The arcs indicate basepairing interactions and are colored by type.
Bar Diagram Help
Basepair interactions are annotated according to the
Leontis-Westhof nomenclature and are colored by type.
Basepair Table Help
<0.1 | <0.2 | <0.3 | <0.4 | <0.5 | <0.6 | <0.7 | <0.8 | <0.9 | <1.0 | >=1.0 |
2QBG | 3U5H | Disc | ||||
---|---|---|---|---|---|---|
A:G2 | cWW | A:C118 | --- | --- | ||
A:C3 | cWW | A:G117 | 7:G1 | cWW | 7:C120 | |
A:C4 | cWW | A:G116 | 7:G2 | cWW | 7:U119 | |
A:C4 | --- | 7:G2 | tSS | 7:A23 | ||
A:C4 | ---- | A:C26 | 7:G2 | tSS | 7:A24 | |
A:U5 | cWW | A:A115 | 7:U3 | cWW | 7:A118 | |
A:G6 | cWW | A:C114 | 7:U4 | cWW | 7:A117 | |
A:G7 | cWW | A:C113 | 7:G5 | cWW | 7:C116 | |
A:C8 | cWW | A:G112 | 7:C6 | cWW | 7:G115 | |
A:G9 | cWW | A:U111 | 7:G7 | cWW | 7:U114 | |
A:G10 | cWW | A:C110 | 7:G8 | cWW | 7:C113 | |
A:C11 | cWW | A:A109 | 7:C9 | cWW | 7:G112 | |
A:C12 | --- | 7:C10 | --- | |||
A:G13 | A:G69 | 7:A11 | tSS | 7:G67 | ||
A:U14 | --- | 7:U12 | --- | |||
--- | --- | 7:A13 | --- | |||
A:A15 | --- | --- | --- | |||
A:G16 | cWW | A:C68 | 7:U14 | cWW | 7:A66 | |
A:C17 | cWW | A:G67 | 7:C15 | cWW | 7:G65 | |
A:G18 | cWW | A:U65 | 7:U16 | cWW | 7:A63 | |
A:C19 | cWW | A:G64 | 7:A17 | cWW | 7:U62 | |
A:G20 | cWW | A:C63 | 7:C18 | cWW | 7:G61 | |
A:G21 | cWW | A:C62 | 7:C19 | cWW | 7:G60 | |
A:U22 | cWW | A:G61 | 7:A20 | cWW | 7:U59 | |
A:G23 | cWW | A:C60 | 7:G21 | cWW | 7:C58 | |
--- | --- | 7:A22 | --- | |||
A:G24 | tSW | A:C27 | --- | 7:G25 | ||
A:U25 | --- | --- | --- | |||
--- | A:C4 | 7:A23 | tSS | 7:G2 | ||
A:C26 | ---- | A:C4 | 7:A24 | tSS | 7:G2 | |
A:C27 | tWS | A:G24 | 7:G25 | --- | ||
A:C28 | cWW | A:G56 | 7:C26 | cWW | 7:U54 | |
A:A29 | cWW | A:U55 | 7:A27 | cWW | 7:U53 | |
A:C30 | cWW | A:G54 | 7:C28 | cWW | 7:G52 | |
A:C30 | ncSW | A:A57 | 7:C28 | cSW | 7:A55 | |
A:C31 | cWW | A:G51 | 7:C29 | ---- | 7:U48 | |
A:C31 | cSW | A:A53 | 7:C29 | cSW | 7:A51 | |
A:C31 | --- | 7:C29 | cWW | 7:G49 | ||
A:U32 | cWW | A:A50 | 7:G30 | cWW | 7:C47 | |
A:G33 | cWW | A:C49 | 7:U31 | cWW | 7:A46 | |
A:A34 | cWW | A:U48 | 7:U32 | cWW | 7:A45 | |
--- | --- | 7:U33 | --- | |||
A:C35 | --- | --- | --- | |||
A:C36 | --- | 7:C34 | --- | |||
A:C37 | cWS | A:U48 | 7:C35 | cWS | 7:A45 | |
A:C38 | cWW | A:G44 | 7:C36 | cWW | 7:G41 | |
A:A39 | cSW | A:A46 | 7:G37 | ntSH | 7:U43 | |
A:U40 | ntSH | A:A45 | 7:U38 | tSH | 7:A42 | |
A:G41 | --- | --- | --- | |||
A:C42 | --- | 7:C39 | --- | |||
A:C43 | --- | 7:C40 | --- | |||
A:G44 | cWW | A:C38 | 7:G41 | cWW | 7:C36 | |
A:G44 | tSW | A:C47 | 7:G41 | tSW | 7:C44 | |
A:A45 | ntHS | A:U40 | 7:A42 | tHS | 7:U38 | |
A:A46 | cWS | A:A39 | 7:U43 | ntHS | 7:G37 | |
A:C47 | tWS | A:G44 | 7:C44 | tWS | 7:G41 | |
A:U48 | cWW | A:A34 | 7:A45 | cWW | 7:U32 | |
A:U48 | cSW | A:C37 | 7:A45 | cSW | 7:C35 | |
A:C49 | cWW | A:G33 | 7:A46 | cWW | 7:U31 | |
A:A50 | cWW | A:U32 | 7:C47 | cWW | 7:G30 | |
A:G51 | cWW | A:C31 | 7:U48 | ---- | 7:C29 | |
--- | A:C31 | 7:G49 | cWW | 7:C29 | ||
--- | --- | 7:U50 | --- | |||
A:A52 | --- | --- | --- | |||
A:A53 | cWS | A:C31 | 7:A51 | cWS | 7:C29 | |
A:G54 | cWW | A:C30 | 7:G52 | cWW | 7:C28 | |
A:U55 | cWW | A:A29 | 7:U53 | cWW | 7:A27 | |
A:G56 | cWW | A:C28 | 7:U54 | cWW | 7:C26 | |
A:A57 | ncWS | A:C30 | 7:A55 | cWS | 7:C28 | |
A:A58 | --- | 7:A56 | --- | |||
A:A59 | --- | 7:G57 | --- | |||
A:C60 | cWW | A:G23 | 7:C58 | cWW | 7:G21 | |
A:G61 | cWW | A:U22 | 7:U59 | cWW | 7:A20 | |
A:C62 | cWW | A:G21 | 7:G60 | cWW | 7:C19 | |
A:C63 | cWW | A:G20 | 7:G61 | cWW | 7:C18 | |
A:G64 | cWW | A:C19 | 7:U62 | cWW | 7:A17 | |
A:U65 | cWW | A:G18 | 7:A63 | cWW | 7:U16 | |
--- | --- | 7:A64 | --- | |||
A:A66 | --- | --- | --- | |||
A:G67 | cWW | A:C17 | 7:G65 | cWW | 7:C15 | |
A:C68 | cWW | A:G16 | 7:A66 | cWW | 7:U14 | |
A:G69 | tHS | A:G107 | 7:G67 | cWW | 7:U111 | |
A:G69 | A:G13 | 7:G67 | tSS | 7:A11 | ||
A:C70 | cWW | A:G106 | 7:C68 | cWW | 7:G110 | |
A:C71 | cWW | A:G105 | 7:C69 | cWW | 7:G109 | |
A:G72 | tSH | A:A104 | 7:U70 | --- | ||
A:G72 | --- | 7:U70 | cWW | 7:A108 | ||
A:A73 | tHW | A:U103 | --- | 7:C107 | ||
A:U74 | bif | A:G102 | 7:G71 | ---- | 7:U106 | |
A:U74 | ---- | A:U103 | 7:G71 | cWW | 7:C107 | |
A:G75 | s55 | A:G102 | 7:A72 | cWW | 7:U106 | |
--- | --- | 7:C73 | --- | |||
--- | --- | 7:C74 | --- | |||
A:G76 | bif | A:G100 | --- | 7:A103 | ||
--- | --- | 7:G75 | tSH | 7:A104 | ||
--- | A:G100 | 7:A76 | tHH | 7:A103 | ||
--- | A:U77 | 7:G77 | cSH | 7:U78 | ||
A:U77 | tWH | A:A99 | 7:U78 | tWH | 7:A102 | |
A:U77 | --- | 7:U78 | cHS | 7:G77 | ||
A:A78 | tHS | A:G98 | 7:A79 | tHS | 7:G101 | |
A:G79 | cWW | A:C97 | 7:G80 | cWW | 7:C100 | |
A:U80 | cWW | A:G96 | 7:U81 | cWW | 7:G99 | |
A:G81 | cWW | A:U95 | 7:G82 | cWW | 7:C98 | |
A:U82 | cWW | A:A94 | 7:U83 | cWW | 7:A97 | |
A:G83 | cWW | A:C93 | 7:A84 | cWW | 7:U96 | |
A:G84 | cWW | A:C92 | 7:G85 | cWW | 7:A95 | |
--- | --- | 7:U86 | --- | |||
A:G85 | cWW | A:C91 | 7:G87 | cWW | 7:C94 | |
A:G86 | cWW | A:C90 | 7:G88 | cWW | 7:C93 | |
A:U87 | --- | 7:G89 | tSH | 7:A92 | ||
--- | --- | 7:U90 | --- | |||
--- | --- | 7:G91 | --- | |||
A:C88 | --- | --- | --- | |||
A:U89 | --- | --- | --- | |||
--- | A:U87 | 7:A92 | tHS | 7:G89 | ||
A:C90 | cWW | A:G86 | 7:C93 | cWW | 7:G88 | |
A:C91 | cWW | A:G85 | 7:C94 | cWW | 7:G87 | |
A:C92 | cWW | A:G84 | 7:A95 | cWW | 7:G85 | |
A:C93 | cWW | A:G83 | 7:U96 | cWW | 7:A84 | |
A:A94 | cWW | A:U82 | 7:A97 | cWW | 7:U83 | |
A:U95 | cWW | A:G81 | 7:C98 | cWW | 7:G82 | |
A:G96 | cWW | A:U80 | 7:G99 | cWW | 7:U81 | |
A:C97 | cWW | A:G79 | 7:C100 | cWW | 7:G80 | |
A:G98 | tSH | A:A78 | 7:G101 | tSH | 7:A79 | |
A:A99 | tHW | A:U77 | 7:A102 | tHW | 7:U78 | |
A:G100 | bif | A:G76 | 7:A103 | --- | ||
A:G100 | --- | 7:A103 | tHH | 7:A76 | ||
--- | --- | 7:A104 | tHS | 7:G75 | ||
A:A101 | --- | 7:C105 | --- | |||
A:G102 | bif | A:U74 | 7:U106 | ---- | 7:G71 | |
A:G102 | s55 | A:G75 | 7:U106 | cWW | 7:A72 | |
A:U103 | tWH | A:A73 | 7:C107 | --- | ||
A:U103 | ---- | A:U74 | 7:C107 | cWW | 7:G71 | |
--- | A:G72 | 7:A108 | cWW | 7:U70 | ||
A:A104 | tHS | A:G72 | --- | 7:U70 | ||
A:G105 | cWW | A:C71 | 7:G109 | cWW | 7:C69 | |
A:G106 | cWW | A:C70 | 7:G110 | cWW | 7:C68 | |
A:G107 | tSH | A:G69 | 7:U111 | cWW | 7:G67 | |
A:A108 | --- | --- | --- | |||
A:A109 | cWW | A:C11 | 7:G112 | cWW | 7:C9 | |
A:C110 | cWW | A:G10 | 7:C113 | cWW | 7:G8 | |
A:U111 | cWW | A:G9 | 7:U114 | cWW | 7:G7 | |
A:G112 | cWW | A:C8 | 7:G115 | cWW | 7:C6 | |
A:C113 | cWW | A:G7 | 7:C116 | cWW | 7:G5 | |
A:C114 | cWW | A:G6 | 7:A117 | cWW | 7:U4 | |
A:A115 | cWW | A:U5 | 7:A118 | cWW | 7:U3 | |
A:G116 | cWW | A:C4 | 7:U119 | cWW | 7:G2 | |
A:G117 | cWW | A:C3 | 7:C120 | cWW | 7:G1 | |
--- | --- | 7:U121 | --- | |||
A:C118 | cWW | A:G2 | --- | --- |
GCCUGGCGGCCGU-AGCGCGGUG--GUCCCACCUGA-CCCCAUGCCGAACUCAG--AAGUGAAACGCCGU-AGCGCCGAU -GGUUGCGGCCAUA-UCUACCAGAA--AGCACCGUUU-CCCGU-CCGAUCAACUGU-AGUUAAGCUGGUAA-GAGCCU-G G-----GUAGUGUGG-GGU---CUCCCCAUGCGAG-AGU-AGGGAACUGCCAGG-C- ACCGAG-UAGUGUAGUGGGUGA--CCAUACGCGAAACUCA-GGU-GCUGCAAUCU--
Summary statistics
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