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Release idAll changesDateNumber of IFEs
2.92 (current)4 changes2016-09-097001
2.919 changes2016-09-026993
2.903 changes2016-08-266985
2.8911 changes2016-08-196982
2.888 changes2016-08-126969
2.878 changes2016-08-056958
2.865 changes2016-07-296949
2.8519 changes2016-07-226929
2.844 changes2016-07-156901
2.838 changes2016-07-086897
2.821 changes2016-07-016866
2.819 changes2016-06-246863
2.801 changes2016-06-176844
2.791 changes2016-06-106842
2.7811 changes2016-06-036839
2.7715 changes2016-05-276818
2.7612 changes2016-05-206754
2.755 changes2016-05-136729
2.7415 changes2016-05-066716
2.7313 changes2016-04-296692
2.722 changes2016-04-226646
2.719 changes2016-04-156643
2.709 changes2016-04-086627
2.692 changes2016-04-016580
2.683 changes2016-03-256575
2.671 changes2016-03-186567
2.669 changes2016-03-116565
2.651 changes2016-03-046550
2.6410 changes2016-02-266548
2.632 changes2016-02-196536
2.620 changes2016-02-126532
2.6111 changes2016-02-056532
2.6022 changes2016-01-296518
2.591 changes2016-01-226406
2.5820 changes2016-01-156405
2.571 changes2016-01-086354
2.567 changes2016-01-016352
2.5511 changes2015-12-256332
2.544 changes2015-12-186314
2.535 changes2015-12-116308
2.528 changes2015-12-046304
2.512 changes2015-11-276297
2.507 changes2015-11-206295
2.496 changes2015-11-136281
2.484 changes2015-11-066272
2.473 changes2015-10-306265
2.46250 changes2015-10-236262
2.4521 changes2015-10-166219
2.443 changes2015-10-096173
2.433 changes2015-10-026164
2.4213 changes2015-09-256153
2.414 changes2015-09-186127
2.405 changes2015-09-116123
2.392 changes2015-09-046115
2.386 changes2015-08-286111
2.375 changes2015-08-216099
2.3614 changes2015-08-146090
2.3517 changes2015-08-076066
2.342 changes2015-07-316040
2.334 changes2015-07-246034
2.328 changes2015-07-176029
2.313 changes2015-07-106017
2.306 changes2015-07-036011
2.290 changes2015-06-266001
2.280 changes2015-06-196001
2.2715 changes2015-06-126001
2.267 changes2015-06-055867
2.253 changes2015-05-295852
2.2415 changes2015-05-225849
2.236 changes2015-05-155823
2.228 changes2015-05-085782
2.217 changes2015-05-015773
2.208 changes2015-04-245768
2.1915 changes2015-04-175750
2.185 changes2015-04-105728
2.170 changes2015-04-035719
2.165 changes2015-03-275719
2.1510 changes2015-03-205714
2.145 changes2015-03-135687
2.135 changes2015-03-065681
2.126 changes2015-02-275673
2.114 changes2015-02-205662
2.1023 changes2015-02-135656
2.99 changes2015-02-065614
2.87 changes2015-01-305605
2.710 changes2015-01-235563
2.62 changes2015-01-165548
2.51 changes2015-01-095535
2.48 changes2015-01-025534
2.34 changes2014-12-265520
2.21 changes2014-12-195513
2.130 changes2014-12-125508
2.03184 changes2014-12-055507
1.892014-12-05
1.883 changes2014-11-28
1.872 changes2014-11-21
1.862014-11-14
1.856 changes2014-11-07
1.843 changes2014-10-31
1.835 changes2014-10-24
1.824 changes2014-10-17
1.812014-10-10
1.803 changes2014-10-03
1.792014-09-26
1.782 changes2014-09-19
1.773 changes2014-09-12
1.762014-09-05
1.752014-08-29
1.744 changes2014-08-22
1.734 changes2014-08-15
1.726 changes2014-08-08
1.714 changes2014-08-01
1.702014-07-25
1.693 changes2014-07-18
1.683 changes2014-07-04
1.672014-06-27
1.662014-06-20
1.653 changes2014-06-13
1.643 changes2014-06-07
1.633 changes2014-05-31
1.622014-05-17
1.612 changes2014-05-10
1.602014-05-03
1.592014-04-26
1.582 changes2014-04-19
1.574 changes2014-04-12
1.563 changes2014-04-05
1.551 changes2014-03-29
1.542014-03-22
1.532 changes2014-03-17
1.522014-03-08
1.512014-03-01
1.502014-02-22
1.493 changes2014-02-15
1.482014-02-08
1.472014-02-01
1.462014-01-25
1.452014-01-18
1.442014-01-11
1.432014-01-04
1.422013-12-28
1.415 changes2013-12-21
1.403 changes2013-12-14
1.392013-12-07
1.382013-11-30
1.373 changes2013-11-23
1.364 changes2013-11-16
1.352 changes2013-11-09
1.342013-10-26
1.332 changes2013-10-19
1.322013-10-12
1.312013-10-05
1.302013-09-28
1.292013-09-21
1.282 changes2013-09-14
1.272013-09-07
1.262 changes2013-08-31
1.252013-08-24
1.242013-08-17
1.234 changes2013-08-10
1.224 changes2013-08-03
1.212013-07-27
1.203 changes2013-07-20
1.192013-07-13
1.183 changes2013-07-06
1.173 changes2013-06-29
1.162 changes2013-06-22
1.152013-06-15
1.142 changes2013-06-08
1.133 changes2013-06-01
1.123 changes2013-05-25
1.112013-05-18
1.102013-05-11
1.92 changes2013-05-04
1.83 changes2013-04-27
1.72 changes2013-04-20
1.62013-04-13
1.56 changes2013-04-06
1.42013-03-30
1.32013-03-23
1.22013-03-16
1.13 changes2013-03-09
1.04 changes2013-03-02
0.1103 changes2013-02-23
0.1095 changes2013-02-16
0.1082 changes2013-02-09
0.1073 changes2013-02-02
0.1062013-01-26
0.1055 changes2013-01-19
0.1042013-01-12
0.1032013-01-05
0.1022012-12-29
0.1012012-12-22
0.1002012-12-15
0.992012-12-08
0.982012-12-01
0.972012-11-24
0.964 changes2012-11-17
0.952012-11-10
0.942 changes2012-11-03
0.931 changes2012-10-27
0.922012-10-20
0.912012-10-13
0.903 changes2012-10-06
0.892012-09-29
0.882012-09-22
0.872012-09-15
0.862012-09-08
0.853 changes2012-09-01
0.842012-08-25
0.834 changes2012-08-18
0.823 changes2012-08-11
0.812012-08-04
0.802012-07-28
0.792 changes2012-07-21
0.782012-07-14
0.772012-07-07
0.762 changes2012-06-30
0.754 changes2012-06-23
0.742012-06-16
0.732012-06-09
0.722012-06-02
0.713 changes2012-05-26
0.702012-05-19
0.693 changes2012-05-12
0.682012-05-05
0.672012-04-28
0.663 changes2012-04-21
0.651 changes2012-04-14
0.642012-04-07
0.633 changes2012-03-31
0.625 changes2012-03-24
0.612012-03-17
0.602012-03-10
0.592012-03-03
0.582012-02-25
0.571 changes2012-02-18
0.562012-02-11
0.552012-02-04
0.543 changes2012-01-28
0.532012-01-21
0.523 changes2012-01-14
0.512012-01-07
0.502011-12-31
0.492011-12-24
0.482 changes2011-12-17
0.472011-12-10
0.462011-12-03
0.452011-11-26
0.442011-11-19
0.432011-11-12
0.421 changes2011-11-05
0.412 changes2011-10-29
0.402011-10-22
0.392 changes2011-10-15
0.382011-10-08
0.372 changes2011-10-01
0.363 changes2011-09-24
0.352011-09-17
0.342 changes2011-09-10
0.333 changes2011-09-03
0.321 changes2011-08-27
0.313 changes2011-08-20
0.302011-08-13
0.292011-08-06
0.282011-07-30
0.272011-07-23
0.263 changes2011-07-16
0.252011-07-09
0.242011-07-02
0.232011-06-25
0.221 changes2011-06-18
0.212 changes2011-06-11
0.205 changes2011-06-04
0.1913 changes2011-05-28
0.182011-05-21
0.1717 changes2011-05-14
0.1631 changes2011-05-07
0.152011-04-30
0.144 changes2011-04-23
0.132011-04-16
0.123 changes2011-04-11
0.1112 changes2011-04-09
0.102011-04-02
0.93 changes2011-03-26
0.82011-03-19
0.73 changes2011-03-12
0.62011-03-05
0.52 changes2011-02-26
0.42011-02-19
0.32011-02-16
0.23 changes2011-02-12
0.12011-02-05

We are upgrading the BGSU RNA Site to include new RNA 3D structures distributed in mmCIF format. In September of 2016, we calculated release 2.0 and each subsequent weekly release. From each RNA-containing 3D structure file, we identify Integrated Functional Elements (IFEs, for example, the ribosomal small subunit, the eukaryotic large subunit including the 5.8S rRNA, small duplexes, or other basepaired structures consisting of multiple chains), group them by sequence, structure, and species into equivalence classes, and from each equivalence class, we select a representative. The collection of representatives is referred to as a non-redundant (NR) list, but note that each NR list will contain one instance of homologous IFEs from different species.



The BGSU RNA Site hosts non-redundant sets of RNA-containing 3D structures obtained according to the methodology described in the book chapter Nonredundant 3D Structure Datasets for RNA Knowledge Extraction and Benchmarking that appeared in the book RNA 3D Structure Analysis and Prediction edited by Professors Leontis and Westhof.

Please use the following citation when using this resource:

Leontis, N. B., & Zirbel, C. L. (2012). Nonredundant 3D Structure Datasets for RNA Knowledge Extraction and Benchmarking. In N. Leontis & E. Westhof (Eds.), (Vol. 27, pp. 281–298). Springer Berlin Heidelberg. doi:10.1007/978-3-642-25740-7_13

Notice PDB files with no full nucleotides are not included in the non-redundant lists. For example, see PDB 1DV4.

Unique and stable ids are assigned to all non-redundant equivalence classes of structure files. Non-redundant lists are updated automatically every week, and a versioning system is implemented to provide independent access to data snapshots. Full description will appear in a separate publication.

The old web interface is no longer developed or supported. It can be accessed at http://rna.bgsu.edu/nrlist/oldsite.html.