Equivalence class NR_2.5_15912.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8AMI|1|B+ 8AMI|1|A (rep) | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with barium ions (model 2) | X-ray diffraction | 1.79 | 2022-11-23 | |||
| 2 | 8AMG|1|H+ 8AMG|1|G | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-ray diffraction | 2.26 | 2022-11-23 | |||
| 3 | 8AMG|1|E+ 8AMG|1|F | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-ray diffraction | 2.26 | 2022-11-23 | |||
| 4 | 8AMG|1|A+ 8AMG|1|B | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-ray diffraction | 2.26 | 2022-11-23 | |||
| 5 | 8AMG|1|C+ 8AMG|1|D | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-ray diffraction | 2.26 | 2022-11-23 | |||
| 6 | 8AMG|1|J+ 8AMG|1|I | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-ray diffraction | 2.26 | 2022-11-23 | |||
| 7 | 8AMG|1|K+ 8AMG|1|L | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-ray diffraction | 2.26 | 2022-11-23 | |||
| 8 | 8AMJ|1|A+ 8AMJ|1|B | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of unliganded AUGUGGCAU duplex | X-ray diffraction | 2.02 | 2022-11-23 | |||
| 9 | 8AMN|1|A+ 8AMN|1|B | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 10 | 8AMN|1|C+ 8AMN|1|D | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 11 | 8AMN|1|E+ 8AMN|1|F | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 12 | 8AMN|1|G+ 8AMN|1|H | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 13 | 8AMN|1|I+ 8AMN|1|J | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 14 | 8AMN|1|K+ 8AMN|1|L | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 15 | 8AMN|1|M+ 8AMN|1|N | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 16 | 8AMN|1|O+ 8AMN|1|P | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 17 | 8AMN|1|Q+ 8AMN|1|R | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 18 | 8AMN|1|S+ 8AMN|1|T | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 19 | 8AMN|1|U+ 8AMN|1|V | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 20 | 8AMN|1|Y+ 8AMN|1|Z | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 21 | 8AMN|1|a+ 8AMN|1|b | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 | |||
| 22 | 8AMN|1|c+ 8AMN|1|d | RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Homo sapiens | Crystal structure of AUGUGGCAU duplex with strontium ions | X-ray diffraction | 2.46 | 2022-11-23 |
Release history
| Release | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8AMN|1|a+8AMN|1|b | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 2 | 8AMN|1|Y+8AMN|1|Z | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 3 | 8AMN|1|c+8AMN|1|d | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 4 | 8AMG|1|C+8AMG|1|D | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-RAY DIFFRACTION | 2.26 | 9 |
| 5 | 8AMN|1|K+8AMN|1|L | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 6 | 8AMG|1|E+8AMG|1|F | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-RAY DIFFRACTION | 2.26 | 9 |
| 7 | 8AMG|1|H+8AMG|1|G | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-RAY DIFFRACTION | 2.26 | 10 |
| 8 | 8AMG|1|K+8AMG|1|L | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-RAY DIFFRACTION | 2.26 | 9 |
| 9 | 8AMG|1|J+8AMG|1|I | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-RAY DIFFRACTION | 2.26 | 10 |
| 10 | 8AMI|1|B+8AMI|1|A | Crystal structure of AUGUGGCAU duplex with barium ions (model 2) | X-RAY DIFFRACTION | 1.79 | 10 |
| 11 | 8AMG|1|A+8AMG|1|B | Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | X-RAY DIFFRACTION | 2.26 | 9 |
| 12 | 8AMN|1|C+8AMN|1|D | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 13 | 8AMN|1|Q+8AMN|1|R | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 14 | 8AMN|1|G+8AMN|1|H | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 15 | 8AMN|1|O+8AMN|1|P | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 16 | 8AMN|1|U+8AMN|1|V | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 17 | 8AMN|1|M+8AMN|1|N | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 18 | 8AMN|1|A+8AMN|1|B | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 10 |
| 19 | 8AMN|1|I+8AMN|1|J | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 20 | 8AMN|1|E+8AMN|1|F | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |
| 21 | 8AMJ|1|A+8AMJ|1|B | Crystal structure of unliganded AUGUGGCAU duplex | X-RAY DIFFRACTION | 2.02 | 9 |
| 22 | 8AMN|1|S+8AMN|1|T | Crystal structure of AUGUGGCAU duplex with strontium ions | X-RAY DIFFRACTION | 2.46 | 9 |