RNA 3D Hub //

Hairpin Loop Motif Atlas Release 3.96

Polymorphs
#Varna 2DMotifNum NtsInstances
1
  • HL_37824.7
HL_37824.7
  • Basepair signature: cWW-F-F-F-F
  • History status: Updated, 2 parents
  • GNRA (295)
  • GNRA variation (14)
  • GNRA with GA tSW pair (3)
  • GNRA related (1)
    		• 6349
    2
    • HL_28252.6
    		HL_28252.6
    • Basepair signature: cWW-tWH-F-F-F-F-F
    • History status: Updated, 1 parent
  • T-loop with 2 stacked bulged bases (132)
  • T-loop with 2 bulged bases not stacked (2)
  • T-loop related (1)
    		• 9140
    3
    • HL_34617.5
    		HL_34617.5
    • Basepair signature: cWW-tSW-F
    • History status: Updated, 1 parent
  • UNCG (51)
  • UNCG variation (2)
    		• 557
    4
    • HL_06059.5
    		HL_06059.5
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Updated, 1 parent
  • tRNA anticodon loop (35)
  • Anticodon loop related (5)
    		• 950
    5
    • HL_48778.2
    		HL_48778.2
    • Basepair signature: cWW-F
    • History status: Updated, 1 parent
  • Mini UNCG (36)
  • Mini UNCG with extended bulge (2)
    		• 346
    6
    • HL_48417.5
    		HL_48417.5
    • Basepair signature: cWW-F-F
    • History status: Updated, 1 parent
  • tRNA D-loop (1)
    		• 426
    7
    • HL_93324.4
    		HL_93324.4
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Updated, 1 parent
  • Pseudoknot geometry (21)
    		• 824
    8
    • HL_77436.5
    		HL_77436.5
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Updated, 2 parents
  • T-loop related (11)
  • tRNA anticodon loop (3)
  • Other HL (2)
  • GNRA related (1)
  • T-loop with 1 bulged base (1)
    		• 723
    9
    • HL_33074.4
    		HL_33074.4
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
  • U1 small nuclear ribonucleoprotein A binding hairpin (21)
    		• 1022
    10
    • HL_22584.5
    		HL_22584.5
    • Basepair signature: cWW-tSW-F
    • History status: Exact match
  • Fab BL3-6 binding hairpin with tSW (18)
  • Other HL (3)
    		• 522
    11
    • HL_75660.5
    		HL_75660.5
    • Basepair signature: cWW-F
    • History status: Updated, 2 parents
    		319
    12
    • HL_31585.3
    		HL_31585.3
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		719
    13
    • HL_01609.3
    		HL_01609.3
    • Basepair signature: cWW-tWH-F-F-F
    • History status: Exact match
  • T-loop with 2 bulged bases not stacked (7)
  • T-loop with 2 stacked bulged bases (5)
  • T-loop with 1 bulged base (1)
    		• 718
    14
    • HL_81538.2
    		HL_81538.2
    • Basepair signature: cWW-tSH-F-F-F-F
    • History status: Exact match
  • GNRA wlth tandem sheared (10)
  • GNRA related (1)
    		• 816
    15
    • HL_56334.1
    		HL_56334.1
    • Basepair signature: cWW-F
    • History status: Exact match
  • Mini UNCG (14)
  • Mini UNCG related (2)
    		• 316
    16
    • HL_53890.2
    		HL_53890.2
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • UNCG variation (1)
  • GNRA related (1)
    		• 515
    17
    • HL_30068.2
    		HL_30068.2
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
  • GNRA (1)
    		• 615
    18
    • HL_30680.3
    		HL_30680.3
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (14)
    		• 715
    19
    • HL_57176.2
    		HL_57176.2
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • Pseudoknot geometry with 3' bulge (8)
    		• 514
    20
    • HL_20811.4
    		HL_20811.4
    • Basepair signature: cWW-cWS-F
    • History status: Updated, 1 parent
  • tRNA D-loop (13)
  • Other HL (1)
    		• 514
    21
    • HL_65794.5
    		HL_65794.5
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (6)
  • Ribsomal LSU H95 (4)
    		• 614
    22
    • HL_27670.2
    		HL_27670.2
    • Basepair signature: cWW-tWH-F-F
    • History status: Exact match
  • T-loop with unstacked turn (10)
    		• 613
    23
    • HL_73266.8
    		HL_73266.8
    • Basepair signature: cWW-F-F-cSW-cSH-F
    • History status: Exact match
    		912
    24
    • HL_66853.7
    		HL_66853.7
    • Basepair signature: cWW-cWS-F-cSH
    • History status: Exact match
    		711
    25
    • HL_75293.5
    		HL_75293.5
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Updated, 1 parent
    		1011
    26
    • HL_80709.3
    		HL_80709.3
    • Basepair signature: cWW-F-F-F
    • History status: Updated, 1 parent
    		511
    27
    • HL_85367.2
    		HL_85367.2
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		811
    28
    • HL_49922.4
    		HL_49922.4
    • Basepair signature: cWW-F-F-F
    • History status: Updated, 1 parent
    		510
    29
    • HL_20167.2
    		HL_20167.2
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • T-loop related (1)
  • GNRA with extra cWW (1)
    		• 810
    30
    • HL_47787.2
    		HL_47787.2
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		610
    31
    • HL_77600.2
    		HL_77600.2
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (4)
    		• 710
    32
    • HL_78347.4
    		HL_78347.4
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		69
    33
    • HL_04171.7
    		HL_04171.7
    • Basepair signature: cWW-cWW-F-F-F-F-F-F
    • History status: Exact match
    		109
    34
    • HL_67407.4
    		HL_67407.4
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Updated, 1 parent
    		109
    35
    • HL_04783.2
    		HL_04783.2
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • GNRA related (3)
    		• 59
    36
    • HL_84299.4
    		HL_84299.4
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Updated, 2 parents
  • GNRA related (2)
  • T-loop related (1)
    		• 89
    37
    • HL_64690.6
    		HL_64690.6
    • Basepair signature: cWW-cSW-F-F-F-F
    • History status: Exact match
    		89
    38
    • HL_10453.3
    		HL_10453.3
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Updated, 2 parents
  • tRNA anticodon loop (4)
    		• 79
    39
    • HL_37369.2
    		HL_37369.2
    • Basepair signature: cWW-tSH-F-F-F
    • History status: Exact match
    		79
    40
    • HL_52953.2
    		HL_52953.2
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		68
    41
    • HL_61996.2
    		HL_61996.2
    • Basepair signature: cWW-tWH-F-F-F
    • History status: Exact match
    		78
    42
    • HL_89567.2
    		HL_89567.2
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		58
    43
    • HL_93616.2
    		HL_93616.2
    • Basepair signature: cWW-cWS-F-F-F-F
    • History status: Exact match
  • tRNA D-loop (7)
    		• 88
    44
    • HL_77082.1
    		HL_77082.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • tRNA anticodon loop (2)
  • Anticodon loop related (2)
  • Pseudoknot geometry (1)
    		• 88
    45
    • HL_32346.3
    		HL_32346.3
    • Basepair signature: cWW-F
    • History status: Exact match
    		38
    46
    • HL_91939.2
    		HL_91939.2
    • Basepair signature: cWW-tSH-tHH-tWW-F-F-F
    • History status: Exact match
    		118
    47
    • HL_69752.2
    		HL_69752.2
    • Basepair signature: cWW-F
    • History status: Updated, 2 parents
  • D-loop related (1)
    		• 37
    48
    • HL_32735.2
    		HL_32735.2
    • Basepair signature: cWW-tSH-F-F-F-F-F
    • History status: Exact match
    		97
    49
    • HL_74055.2
    		HL_74055.2
    • Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW
    • History status: Exact match
    		137
    50
    • HL_42998.2
    		HL_42998.2
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		87
    51
    • HL_04259.3
    		HL_04259.3
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Updated, 1 parent
  • GNRA with extra cWW (3)
  • GNRA related (1)
  • tRNA anticodon loop (1)
  • GNRA with extra tWH (1)
    		• 87
    52
    • HL_81545.2
    		HL_81545.2
    • Basepair signature: cWW-tWH-F-F-F-F
    • History status: Exact match
    		87
    53
    • HL_35677.3
    		HL_35677.3
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot with intercalation (3)
    		• 97
    54
    • HL_38901.2
    		HL_38901.2
    • Basepair signature: cWW-F-cSH
    • History status: Exact match
  • tRNA D-loop (4)
  • D-loop related (1)
    		• 57
    55
    • HL_19210.3
    		HL_19210.3
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		107
    56
    • HL_36684.4
    		HL_36684.4
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Updated, 1 parent
    		117
    57
    • HL_87553.1
    		HL_87553.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		77
    58
    • HL_87954.2
    		HL_87954.2
    • Basepair signature: cWW-tSW-F
    • History status: Exact match
    		57
    59
    • HL_20743.5
    		HL_20743.5
    • Basepair signature: cWW-cWW-F-F-F-F
    • History status: Exact match
    		87
    60
    • HL_88205.2
    		HL_88205.2
    • Basepair signature: cWW-cWS-tSW-F-F
    • History status: Exact match
    		77
    61
    • HL_07886.3
    		HL_07886.3
    • Basepair signature: cWW-F-F-F
    • History status: Updated, 1 parent
    		56
    62
    • HL_53454.2
    		HL_53454.2
    • Basepair signature: cWW-tSH-F-F-F-F-F
    • History status: Exact match
    		96
    63
    • HL_93438.2
    		HL_93438.2
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot with intercalation (3)
    		• 106
    64
    • HL_83632.1
    		HL_83632.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • tRNA anticodon loop (4)
    		• 86
    65
    • HL_93535.1
    		HL_93535.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 2 parents
  • GNRA (2)
    		• 66
    66
    • HL_55195.3
    		HL_55195.3
    • Basepair signature: cWW-F
    • History status: Exact match
    		36
    67
    • HL_01962.2
    		HL_01962.2
    • Basepair signature: cWW-tWH-tWH-F
    • History status: Exact match
    		76
    68
    • HL_99769.3
    		HL_99769.3
    • Basepair signature: cWW-cWW-F-F-F-F
    • History status: Exact match
    		86
    69
    • HL_56131.2
    		HL_56131.2
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		46
    70
    • HL_50860.2
    		HL_50860.2
    • Basepair signature: cWW-F-cWH-F-F-F-F
    • History status: Exact match
    		96
    71
    • HL_97756.2
    		HL_97756.2
    • Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
    • History status: Exact match
    		146
    72
    • HL_42046.2
    		HL_42046.2
    • Basepair signature: cWW-tSS-F-F-F
    • History status: Exact match
    		75
    73
    • HL_89199.2
    		HL_89199.2
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • Mini UNCG (4)
    		• 55
    74
    • HL_50006.2
    		HL_50006.2
    • Basepair signature: cWW-F-F
    • History status: Updated, 1 parent
    		45
    75
    • HL_38649.1
    		HL_38649.1
    • Basepair signature: cWW-tSH-F-F-F-F-F-F
    • History status: Exact match
    		105
    76
    • HL_45175.1
    		HL_45175.1
    • Basepair signature: cWW-cWS-F-F
    • History status: Exact match
  • tRNA D-loop (4)
    		• 65
    77
    • HL_57875.1
    		HL_57875.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		45
    78
    • HL_86769.4
    		HL_86769.4
    • Basepair signature: cWW-cWW-cSH-F
    • History status: Exact match
    		75
    79
    • HL_40252.3
    		HL_40252.3
    • Basepair signature: cWW-tSH-cWS-F
    • History status: Updated, 1 parent
    		75
    80
    • HL_05304.3
    		HL_05304.3
    • Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F
    • History status: Exact match
    		135
    81
    • HL_78197.1
    		HL_78197.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot (2)
    		• 85
    82
    • HL_99867.1
    		HL_99867.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		105
    83
    • HL_49941.1
    		HL_49941.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • tRNA D-loop (1)
    		• 74
    84
    • HL_70782.2
    		HL_70782.2
    • Basepair signature: cWW-F
    • History status: Exact match
    		34
    85
    • HL_98864.1
    		HL_98864.1
    • Basepair signature: cWW-tWH-F-F-F-F-F-F
    • History status: Exact match
  • T-loop with unstacked turn (4)
    		• 104
    86
    • HL_67079.1
    		HL_67079.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: New id, 2 parents
    		94
    87
    • HL_82710.2
    		HL_82710.2
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		54
    88
    • HL_08100.1
    		HL_08100.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • Other HL (1)
    		• 54
    89
    • HL_38808.1
    		HL_38808.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    		44
    90
    • HL_89881.5
    		HL_89881.5
    • Basepair signature: cWW-tHW-F-F-F-F-F-F
    • History status: Updated, 1 parent
    		104
    91
    • HL_50537.6
    		HL_50537.6
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • D-loop related (1)
    		• 54
    92
    • HL_13963.3
    		HL_13963.3
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		44
    93
    • HL_50779.4
    		HL_50779.4
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Updated, 1 parent
    		94
    94
    • HL_55436.1
    		HL_55436.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (1)
    		• 104
    95
    • HL_28075.1
    		HL_28075.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		74
    96
    • HL_41464.2
    		HL_41464.2
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		74
    97
    • HL_06226.4
    		HL_06226.4
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Updated, 1 parent
    		94
    98
    • HL_02817.2
    		HL_02817.2
    • Basepair signature: cWW-F-F-F-F
    • History status: Updated, 1 parent
    		63
    99
    • HL_07480.1
    		HL_07480.1
    • Basepair signature: cWW-tSH-F-F-F
    • History status: Exact match
    		73
    100
    • HL_20751.2
    		HL_20751.2
    • Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		133
    101
    • HL_97917.2
    		HL_97917.2
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		63
    102
    • HL_88364.2
    		HL_88364.2
    • Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		153
    103
    • HL_29129.3
    		HL_29129.3
    • Basepair signature: cWW-tWH-F-F-F-F
    • History status: Exact match
    		83
    104
    • HL_16398.2
    		HL_16398.2
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		83
    105
    • HL_25847.2
    		HL_25847.2
    • Basepair signature: cWW-F-cSH-tHW-F-F-F
    • History status: Exact match
    		103
    106
    • HL_07951.2
    		HL_07951.2
    • Basepair signature: cWW-F-F
    • History status: Exact match
  • tRNA D-loop (1)
    		• 43
    107
    • HL_86109.1
    		HL_86109.1
    • Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F
    • History status: Exact match
    		123
    108
    • HL_25967.2
    		HL_25967.2
    • Basepair signature: cWW-cWW-F-F-F
    • History status: Exact match
    		73
    109
    • HL_04642.1
    		HL_04642.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • tRNA D-loop (1)
    		• 73
    110
    • HL_50418.1
    		HL_50418.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		113
    111
    • HL_86870.1
    		HL_86870.1
    • Basepair signature: cWW-cWW-F
    • History status: Exact match
    		53
    112
    • HL_67667.2
    		HL_67667.2
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		43
    113
    • HL_83808.4
    		HL_83808.4
    • Basepair signature: cWW-tWW-F-F-F
    • History status: Exact match
  • Pseudoknot (3)
    		• 73
    114
    • HL_80599.2
    		HL_80599.2
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
    		93
    115
    • HL_31581.6
    		HL_31581.6
    • Basepair signature: cWW-cHS-F-F-F-cWW-F-F-F
    • History status: Exact match
    		113
    116
    • HL_94376.1
    		HL_94376.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (2)
    		• 113
    117
    • HL_09260.2
    		HL_09260.2
    • Basepair signature: cWW-F-F-F-F
    • History status: Updated, 1 parent
  • tRNA D-loop (2)
    		• 63
    118
    • HL_68572.1
    		HL_68572.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
    		93
    119
    • HL_91503.7
    		HL_91503.7
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
    		93
    120
    • HL_73247.1
    		HL_73247.1
    • Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (3)
    		• 153
    121
    • HL_09452.1
    		HL_09452.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		53
    122
    • HL_68767.1
    		HL_68767.1
    • Basepair signature: cWW-cWS-tSH-cWS-F
    • History status: Exact match
  • tRNA D-loop (3)
    		• 83
    123
    • HL_80922.2
    		HL_80922.2
    • Basepair signature: cWW-tSH-F
    • History status: Exact match
    		53
    124
    • HL_20535.2
    		HL_20535.2
    • Basepair signature: cWW-F-F-F-F
    • History status: Updated, 2 parents
  • T-loop (1)
    		• 63
    125
    • HL_81100.2
    		HL_81100.2
    • Basepair signature: cWW
    • History status: Exact match
    		23
    126
    • HL_15574.1
    		HL_15574.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		72
    127
    • HL_41902.1
    		HL_41902.1
    • Basepair signature: cWW-cWW-cWH-F-F-F-F-F
    • History status: Exact match
    		112
    128
    • HL_81205.3
    		HL_81205.3
    • Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F
    • History status: Updated, 1 parent
    		142
    129
    • HL_60293.1
    		HL_60293.1
    • Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F
    • History status: Exact match
  • G-quadruplex (2)
    		• 152
    130
    • HL_10540.1
    		HL_10540.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		72
    131
    • HL_51921.1
    		HL_51921.1
    • Basepair signature: cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		182
    132
    • HL_66103.1
    		HL_66103.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		42
    133
    • HL_02887.3
    		HL_02887.3
    • Basepair signature: cWW-tWH-F-F-F-F-F-F
    • History status: Updated, 1 parent
  • T-loop with 3 stacked bulged bases (2)
    		• 102
    134
    • HL_56676.1
    		HL_56676.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
  • UNCG variation (1)
    		• 42
    135
    • HL_70658.1
    		HL_70658.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		122
    136
    • HL_81312.1
    		HL_81312.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		112
    137
    • HL_60340.1
    		HL_60340.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		42
    138
    • HL_25061.1
    		HL_25061.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		62
    139
    • HL_78677.1
    		HL_78677.1
    • Basepair signature: cWW-F-F
    • History status: New id, 2 parents
    		42
    140
    • HL_86012.1
    		HL_86012.1
    • Basepair signature: cWW-tWH-F-F-F-F
    • History status: Exact match
  • T-loop with unstacked turn (2)
    		• 82
    141
    • HL_12758.3
    		HL_12758.3
    • Basepair signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH
    • History status: Exact match
  • G-quadruplex (2)
    		• 222
    142
    • HL_38168.1
    		HL_38168.1
    • Basepair signature: cWW-F
    • History status: New id, 1 parent
  • Mini UNCG related (1)
    		• 32
    143
    • HL_43517.1
    		HL_43517.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • Mini UNCG (1)
    		• 52
    144
    • HL_57863.1
    		HL_57863.1
    • Basepair signature: cWW-F-F-cWH-cWH-F
    • History status: Exact match
  • G-quadruplex fragment (2)
    		• 92
    145
    • HL_93383.1
    		HL_93383.1
    • Basepair signature: cWW-cSH-F-F-F-F-F-F
    • History status: New id, 1 parent
    		92
    146
    • HL_21372.1
    		HL_21372.1
    • Basepair signature: cWW-F-cSH-F-F
    • History status: Exact match
    		52
    147
    • HL_74379.3
    		HL_74379.3
    • Basepair signature: cWW-F-F-cSS-cSS-F-F-F
    • History status: Updated, 1 parent
    		112
    148
    • HL_53504.3
    		HL_53504.3
    • Basepair signature: cWW-tSH-F-F-F-F-F-F
    • History status: Exact match
    		102
    149
    • HL_80241.1
    		HL_80241.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
    		92
    150
    • HL_89346.1
    		HL_89346.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		172
    151
    • HL_71391.1
    		HL_71391.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		52
    152
    • HL_62934.1
    		HL_62934.1
    • Basepair signature: cWW-tSH-F
    • History status: Exact match
    		52
    153
    • HL_98870.1
    		HL_98870.1
    • Basepair signature: cWW-tSH-tWW-F-F-F-F-F
    • History status: Exact match
    		112
    154
    • HL_13189.1
    		HL_13189.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		42
    155
    • HL_26631.1
    		HL_26631.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		52
    156
    • HL_18565.1
    		HL_18565.1
    • Basepair signature: cWW-cWW-F-F-F-F
    • History status: Exact match
    		62
    157
    • HL_45785.1
    		HL_45785.1
    • Basepair signature: cWW-F-F-F-F-cSH-F-F
    • History status: Exact match
    		102
    158
    • HL_08510.1
    		HL_08510.1
    • Basepair signature: cWW-F-F-cSH-F-F
    • History status: Exact match
    		82
    159
    • HL_13529.1
    		HL_13529.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 2 parents
    		62
    160
    • HL_04725.1
    		HL_04725.1
    • Basepair signature: cWW-cWS-cWW-cWW-cWS
    • History status: Exact match
    		82
    161
    • HL_46501.1
    		HL_46501.1
    • Basepair signature: cWW-cWS
    • History status: New id, 2 parents
  • D-loop related (1)
    		• 42
    162
    • HL_86883.1
    		HL_86883.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		52
    163
    • HL_99324.1
    		HL_99324.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		172
    164
    • HL_27483.1
    		HL_27483.1
    • Basepair signature: cWW-F
    • History status: Exact match
    		32
    165
    • HL_39243.1
    		HL_39243.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		62
    166
    • HL_55305.1
    		HL_55305.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		72
    167
    • HL_68257.1
    		HL_68257.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		112
    168
    • HL_90620.1
    		HL_90620.1
    • Basepair signature: cWW-F-F-F-F-cSW-cSH-F
    • History status: Exact match
    		112
    169
    • HL_47732.1
    		HL_47732.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		82
    170
    • HL_73183.1
    		HL_73183.1
    • Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry with G-bulge (2)
    		• 152
    171
    • HL_22622.1
    		HL_22622.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • Mini UNCG with extended bulge (1)
    		• 72
    172
    • HL_36335.1
    		HL_36335.1
    • Basepair signature: cWW-F-F-cSS-cSS-F
    • History status: Exact match
    		92
    173
    • HL_64292.1
    		HL_64292.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		142
    174
    • HL_13971.1
    		HL_13971.1
    • Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
    • History status: Exact match
    		142
    175
    • HL_59735.5
    		HL_59735.5
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Updated, 1 parent
    		72
    176
    • HL_73255.1
    		HL_73255.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		82
    177
    • HL_23115.1
    		HL_23115.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • tRNA D-loop (1)
    		• 72
    178
    • HL_37344.1
    		HL_37344.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		62
    179
    • HL_02581.1
    		HL_02581.1
    • Basepair signature: cWW-tSH-cWS-tSW-F-F-F
    • History status: Exact match
  • tRNA D-loop (2)
    		• 112
    180
    • HL_41543.1
    		HL_41543.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		102
    181
    • HL_69139.1
    		HL_69139.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		92
    182
    • HL_32392.1
    		HL_32392.1
    • Basepair signature: cWW-F-F
    • History status: New id, 2 parents
    		42
    183
    • HL_60266.1
    		HL_60266.1
    • Basepair signature: cWW-cWW-tWH-F-F-F-F
    • History status: New id, 2 parents
    		102
    184
    • HL_10456.1
    		HL_10456.1
    • Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F
    • History status: Exact match
    		172
    185
    • HL_78284.1
    		HL_78284.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		122
    186
    • HL_28791.1
    		HL_28791.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		61
    187
    • HL_56500.1
    		HL_56500.1
    • Basepair signature: cWW-cWW-F-cSH-F-F
    • History status: Exact match
    		91
    188
    • HL_92488.1
    		HL_92488.1
    • Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F
    • History status: Exact match
    		131
    189
    • HL_73916.1
    		HL_73916.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		371
    190
    • HL_85461.1
    		HL_85461.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		151
    191
    • HL_24792.1
    		HL_24792.1
    • Basepair signature: cWW-cWS-F-F-F
    • History status: Exact match
    		61
    192
    • HL_15802.1
    		HL_15802.1
    • Basepair signature: cWW-cWW-F-F-F
    • History status: New id, 1 parent
    		71
    193
    • HL_93135.1
    		HL_93135.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot (1)
    		• 81
    194
    • HL_20781.1
    		HL_20781.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		101
    195
    • HL_85993.1
    		HL_85993.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    196
    • HL_97983.1
    		HL_97983.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		41
    197
    • HL_11542.1
    		HL_11542.1
    • Basepair signature: cWW-tSH-F-F-F-F-F-F
    • History status: Exact match
    		101
    198
    • HL_38046.1
    		HL_38046.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		81
    199
    • HL_66482.1
    		HL_66482.1
    • Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F
    • History status: Exact match
    		181
    200
    • HL_88558.1
    		HL_88558.1
    • Basepair signature: cWW-tSH-F-F-F-F-F-F-F
    • History status: Exact match
    		111
    201
    • HL_29762.1
    		HL_29762.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    202
    • HL_70751.1
    		HL_70751.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		111
    203
    • HL_07903.1
    		HL_07903.1
    • Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		131
    204
    • HL_33983.1
    		HL_33983.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    205
    • HL_60914.1
    		HL_60914.1
    • Basepair signature: cWW-F
    • History status: Exact match
    		31
    206
    • HL_74292.1
    		HL_74292.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		101
    207
    • HL_98252.1
    		HL_98252.1
    • Basepair signature: cWW-tWW-F-F-F-F
    • History status: Exact match
    		81
    208
    • HL_80008.1
    		HL_80008.1
    • Basepair signature: cWW-F-F-F-cSH-F
    • History status: New id, 1 parent
    		81
    209
    • HL_16991.1
    		HL_16991.1
    • Basepair signature: cWW-cWH-cWH-F-cWH-F
    • History status: Exact match
  • G-quadruplex fragment (1)
    		• 81
    210
    • HL_29958.1
    		HL_29958.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		101
    211
    • HL_00317.1
    		HL_00317.1
    • Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		191
    212
    • HL_12870.1
    		HL_12870.1
    • Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		121
    213
    • HL_04641.1
    		HL_04641.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    214
    • HL_18423.1
    		HL_18423.1
    • Basepair signature: cWW-tSH-tHS-F
    • History status: Exact match
    		71
    215
    • HL_29966.1
    		HL_29966.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		51
    216
    • HL_21400.1
    		HL_21400.1
    • Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH
    • History status: Exact match
  • G-quadruplex (1)
    		• 181
    217
    • HL_35354.1
    		HL_35354.1
    • Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH
    • History status: Exact match
    		211
    218
    • HL_50318.1
    		HL_50318.1
    • Basepair signature: cWW-cSH-F-F
    • History status: Exact match
    		61
    219
    • HL_00914.1
    		HL_00914.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		61
    220
    • HL_80362.1
    		HL_80362.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		51
    221
    • HL_58224.1
    		HL_58224.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    222
    • HL_71925.1
    		HL_71925.1
    • Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		121
    223
    • HL_22135.1
    		HL_22135.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		41
    224
    • HL_63355.1
    		HL_63355.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		131
    225
    • HL_99040.1
    		HL_99040.1
    • Basepair signature: F-F-F-F-F-F
    • History status: Exact match
    		61
    226
    • HL_01255.1
    		HL_01255.1
    • Basepair signature: F-F-F-F-F-F-F-F
    • History status: Exact match
    		81
    227
    • HL_26934.1
    		HL_26934.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		81
    228
    • HL_80411.1
    		HL_80411.1
    • Basepair signature: cWW-F-cSH-F-F-F-F
    • History status: Exact match
    		91
    229
    • HL_18978.1
    		HL_18978.1
    • Basepair signature: cWW-F-F-tHW-F-F-F
    • History status: Exact match
    		91
    230
    • HL_58539.1
    		HL_58539.1
    • Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		131
    231
    • HL_72628.1
    		HL_72628.1
    • Basepair signature: cWW-tSH-F-F-F-F
    • History status: Exact match
    		81
    232
    • HL_08602.1
    		HL_08602.1
    • Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F
    • History status: Exact match
    		111
    233
    • HL_35941.1
    		HL_35941.1
    • Basepair signature: cWW-F
    • History status: Exact match
    		31
    234
    • HL_63801.1
    		HL_63801.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		61
    235
    • HL_59330.1
    		HL_59330.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    236
    • HL_87463.1
    		HL_87463.1
    • Basepair signature: cWW-cWW-F-F-F-F-F
    • History status: Exact match
    		91
    237
    • HL_99748.1
    		HL_99748.1
    • Basepair signature: cWW-F-F-cSH
    • History status: Exact match
  • D-loop related (1)
    		• 61
    238
    • HL_59564.1
    		HL_59564.1
    • Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		201
    239
    • HL_84847.1
    		HL_84847.1
    • Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F
    • History status: Exact match
    		141
    240
    • HL_94980.1
    		HL_94980.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		41
    241
    • HL_23010.1
    		HL_23010.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		81
    242
    • HL_50851.1
    		HL_50851.1
    • Basepair signature: cWW-cWH-cWH-cWH-cWH-F
    • History status: Exact match
  • G-quadruplex fragment (1)
    		• 91
    243
    • HL_02483.1
    		HL_02483.1
    • Basepair signature: cWW-tWH-F-cSH-F-F-F
    • History status: Exact match
    		101
    244
    • HL_14757.1
    		HL_14757.1
    • Basepair signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F
    • History status: Exact match
    		171
    245
    • HL_91641.1
    		HL_91641.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F
    • History status: Exact match
    		161
    246
    • HL_47854.1
    		HL_47854.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		61
    247
    • HL_97733.1
    		HL_97733.1
    • Basepair signature: cWW-F-F-F-cSH-F
    • History status: Exact match
    		81
    248
    • HL_65313.1
    		HL_65313.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 1 parent
    		51
    249
    • HL_15118.1
    		HL_15118.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		111
    250
    • HL_85434.1
    		HL_85434.1
    • Basepair signature: cWW-cWW-F-F-F-F-F-F
    • History status: Exact match
    		101
    251
    • HL_23509.1
    		HL_23509.1
    • Basepair signature: cSH-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		111
    252
    • HL_51447.1
    		HL_51447.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, 1 parent
    		71

    Coloring options:


    Exact match 207; Updated, 1 parent 25; Updated, 2 parents 7; New id, 2 parents 7; New id, 1 parent 6;

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