Hairpin Loop Motif Atlas Release 4.0

#	Motif	Core Nts	Instances
1	HL_34789.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent GNRA (216) GNRA variation (10) GNRA related (2) GNRA with GA tSW pair (1)	6	335
2	HL_33597.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: New id, 1 parent T-loop with 2 stacked bulged bases (78)	9	96
3	HL_61337.1 View exemplar Basepair signature: cWW-tSW-F History status: New id, 2 parents UNCG (35) UNCG variation (2)	5	49
4	HL_90436.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent Mini UNCG (24) Mini UNCG with extended bulge (1)	3	37
5	HL_81376.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent tRNA anticodon loop (22) Anticodon loop related (2)	9	29
6	HL_52651.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot geometry (17)	8	27
7	HL_48677.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent GNRA (1)	6	22
8	HL_13999.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 2 parents T-loop with 2 bulged bases not stacked (7) T-loop with 2 stacked bulged bases (5) T-loop with 1 bulged base (3) T-loop related (1)	7	21
9	HL_75660.6 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	21
10	HL_89167.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents tRNA D-loop (3) tRNA anticodon loop with synthetase (1)	4	20
11	HL_64036.1 View exemplar Basepair signature: cWW-tSW-F History status: New id, 2 parents Fab BL3-6 binding hairpin with tSW (15) Other HL (2)	5	20
12	HL_63894.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: New id, 2 parents T-loop related (5) tRNA anticodon loop with synthetase (2) Other HL (1) T-loop (1)	7	18
13	HL_36992.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents U1 small nuclear ribonucleoprotein A binding hairpin (14)	10	17
14	HL_49081.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent Pseudoknot geometry with 3' bulge (11)	5	17
15	HL_11974.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (3)	8	16
16	HL_30680.4 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 2 parents Pseudoknot geometry (11)	7	15
17	HL_46665.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents GNRA variation (5) Anticodon loop related (1) Pseudoknot geometry (1) tRNA anticodon loop (1)	7	15
18	HL_27670.3 View exemplar Basepair signature: cWW-tWH-F-F History status: Updated, 1 parent T-loop with unstacked turn (10)	6	15
19	HL_77449.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: New id, 2 parents	8	14
20	HL_67772.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents T-loop related (5) T-loop with 1 bulged base (2) Other HL (1)	7	13
21	HL_76371.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: New id, 1 parent	7	13
22	HL_12626.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent Mini UNCG (9) Mini UNCG related (1)	3	12
23	HL_37889.1 View exemplar Basepair signature: cWW-cSW-F-F-F-F History status: New id, 1 parent	8	12
24	HL_68642.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents GNRA wlth tandem sheared (2) Anticodon loop related (2) tRNA anticodon loop (1) Pseudoknot geometry (1) GNRA with extra near cWW (1)	8	12
25	HL_31940.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, > 2 parents	10	12
26	HL_02042.1 View exemplar Basepair signature: cWW-tSH-tHH-tWW-F-F-F History status: New id, 1 parent	11	12
27	HL_12125.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent Ribsomal LSU H95 (3) Pseudoknot geometry (1)	6	12
28	HL_80709.4 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	11
29	HL_50204.1 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: New id, 1 parent	7	11
30	HL_38491.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	11
31	HL_53269.1 View exemplar Basepair signature: cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW History status: New id, 2 parents	13	11
32	HL_59381.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	11
33	HL_51020.1 View exemplar Basepair signature: cWW-cSW-F History status: New id, 2 parents UNCG variation (1)	5	11
34	HL_28592.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	11
35	HL_45359.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents GNRA with extra cWW (5) GNRA wlth extra near cWW (2) T-loop related (1) tRNA anticodon loop (1)	8	10
36	HL_78372.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 1 parent	7	10
37	HL_00911.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot geometry (3)	8	10
38	HL_32346.5 View exemplar Basepair signature: cWW-F History status: Updated, 2 parents	3	10
39	HL_98423.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent GNRA wlth tandem sheared (7)	8	10
40	HL_47171.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	10
41	HL_27530.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	10
42	HL_17803.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot with intercalation (3)	10	9
43	HL_13184.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents	5	9
44	HL_87681.1 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: New id, 1 parent	7	9
45	HL_11773.1 View exemplar Basepair signature: cWW-F-F-cSW-cSH-F History status: New id, 1 parent	9	9
46	HL_37569.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent GNRA related (2)	5	9
47	HL_52011.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: New id, 1 parent	9	9
48	HL_61418.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents T-loop with 1 bulged base (1)	8	8
49	HL_78347.5 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent	6	8
50	HL_63054.1 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: New id, 2 parents tRNA D-loop (5)	8	8
51	HL_78364.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents Purine riboswitch (5) Pseudoknot geometry (1)	5	8
52	HL_31089.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	8
53	HL_35677.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 2 parents Pseudoknot with intercalation (3)	9	8
54	HL_02452.1 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: New id, 1 parent	9	8
55	HL_97756.3 View exemplar Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F History status: Updated, 1 parent	14	7
56	HL_79004.1 View exemplar Basepair signature: cWW-cWW-tSW-F History status: New id, 1 parent	7	7
57	HL_19413.1 View exemplar Basepair signature: cWW-cSW-F History status: New id, 1 parent	5	7
58	HL_36455.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents T-loop related (2) GNRA related (1) GNRA with extra near cWW (1)	8	7
59	HL_04171.8 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Updated, 1 parent	10	6
60	HL_91620.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents GNRA related (2) tRNA anticodon loop (1)	7	6
61	HL_18470.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents tRNA D-loop (2)	8	6
62	HL_56131.2 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	6
63	HL_93535.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent GNRA (1)	6	6
64	HL_50006.4 View exemplar Basepair signature: cWW-F-F History status: Updated, 2 parents	4	5
65	HL_45175.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match tRNA D-loop (5)	6	5
66	HL_86432.1 View exemplar Basepair signature: cWW-tWH-tWH-F-F-F History status: New id, 1 parent	9	5
67	HL_18141.1 View exemplar Basepair signature: cWW-F-cSH History status: New id, 1 parent tRNA D-loop (2) Other HL (1)	5	5
68	HL_81964.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	5
69	HL_97521.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	9	5
70	HL_68749.1 View exemplar Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F History status: New id, 1 parent	13	5
71	HL_92697.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	5
72	HL_89199.3 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent Mini UNCG (3)	5	5
73	HL_50951.1 View exemplar Basepair signature: cWW-F-F-tWH-F-F-F History status: New id, 2 parents	9	5
74	HL_92935.1 View exemplar Basepair signature: cWW-tSW-F History status: New id, 1 parent	5	5
75	HL_32811.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	5
76	HL_20174.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	5
77	HL_51853.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: New id, 2 parents	9	5
78	HL_69752.3 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	5
79	HL_91739.1 View exemplar Basepair signature: cWW-cWS-F-cSH History status: New id, 1 parent tRNA D-loop (1)	7	4
80	HL_97067.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: New id, 2 parents	7	4
81	HL_55043.1 View exemplar Basepair signature: cWW-tSH-cWS-F History status: New id, 1 parent	7	4
82	HL_82185.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F-F History status: New id, 1 parent	10	4
83	HL_01182.1 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: New id, 1 parent	14	4
84	HL_14063.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	4
85	HL_39533.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: New id, 2 parents	8	4
86	HL_82710.3 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	4
87	HL_15296.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	9	4
88	HL_07480.3 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Updated, 1 parent	7	4
89	HL_41169.1 View exemplar Basepair signature: cWW-tSH-F History status: New id, 1 parent	5	4
90	HL_12111.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent Mini UNCG (1)	5	4
91	HL_65478.1 View exemplar Basepair signature: cWW-cWS-F History status: New id, 2 parents tRNA D-loop (4)	5	4
92	HL_44506.1 View exemplar Basepair signature: cWW-cWW-F History status: New id, 2 parents	5	4
93	HL_57900.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	4
94	HL_20751.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent	13	4
95	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
96	HL_04586.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	3
97	HL_34245.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (1)	9	3
98	HL_68571.1 View exemplar Basepair signature: cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	17	3
99	HL_87381.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	3
100	HL_68572.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 2 parents	8	3
101	HL_50525.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: New id, 2 parents	10	3
102	HL_92337.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 1 parent GNRA-like with tWH (1)	7	3
103	HL_50765.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	3
104	HL_74379.4 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F-F History status: Updated, 2 parents	10	3
105	HL_68791.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	3
106	HL_32682.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents UNCG related (1)	4	3
107	HL_98864.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Updated, 1 parent T-loop with unstacked turn (3)	10	3
108	HL_16651.1 View exemplar Basepair signature: cWW History status: New id, > 2 parents	2	3
109	HL_79898.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: New id, 1 parent	10	3
110	HL_02817.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	3
111	HL_91503.8 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent	9	3
112	HL_29561.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: New id, no parents	16	2
113	HL_44740.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	2
114	HL_70658.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	12	2
115	HL_94488.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot geometry with G-bulge (1)	12	2
116	HL_12758.3 View exemplar Basepair signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH History status: Exact match G-quadruplex (2)	22	2
117	HL_71391.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
118	HL_09340.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 2 parents	11	2
119	HL_53014.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	3	2
120	HL_81312.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	2
121	HL_00557.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
122	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: Exact match	17	2
123	HL_00824.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot (1)	8	2
124	HL_72800.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
125	HL_04642.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent tRNA D-loop (2)	7	2
126	HL_34964.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	9	2
127	HL_38916.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	2
128	HL_73884.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	2
129	HL_88364.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent	15	2
130	HL_05426.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	4	2
131	HL_18565.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	2
132	HL_78774.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: New id, 2 parents	10	2
133	HL_11363.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	2
134	HL_39243.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
135	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
136	HL_06315.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: New id, 1 parent	9	2
137	HL_60358.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	9	2
138	HL_75028.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: New id, 1 parent	7	2
139	HL_64640.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents tRNA D-loop (1)	6	2
140	HL_39665.1 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: New id, 1 parent	14	2
141	HL_56676.1 View exemplar Basepair signature: cWW-F-F History status: Exact match UNCG variation (1)	6	2
142	HL_69139.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	2
143	HL_16583.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	2
144	HL_47732.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
145	HL_79745.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	2
146	HL_93383.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	9	2
147	HL_69186.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent tRNA anticodon loop with synthetase (2)	6	2
148	HL_84585.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	2
149	HL_99324.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	2
150	HL_02621.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	2
151	HL_33359.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	2
152	HL_60848.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	12	2
153	HL_37101.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent tRNA D-loop (2)	6	2
154	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: Exact match G-quadruplex fragment (2)	9	2
155	HL_91228.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: New id, 1 parent	9	2
156	HL_20535.3 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	2
157	HL_93658.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: New id, 1 parent T-loop with 3 stacked bulged bases (1)	10	2
158	HL_86012.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match T-loop with unstacked turn (2)	8	2
159	HL_33678.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	4	2
160	HL_08550.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	2
161	HL_37734.1 View exemplar Basepair signature: cWW-cWW-F-F History status: New id, 1 parent	6	2
162	HL_67667.3 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	2
163	HL_94376.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (2)	11	2
164	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
165	HL_33983.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
166	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
167	HL_20781.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
168	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1
169	HL_29762.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
170	HL_58419.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: New id, 1 parent	8	1
171	HL_61907.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	1
172	HL_91641.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F History status: Exact match	16	1
173	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: Exact match G-quadruplex (1)	18	1
174	HL_38046.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
175	HL_94980.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
176	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
177	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
178	HL_72287.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: New id, 1 parent	7	1
179	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
180	HL_18423.1 View exemplar Basepair signature: cWW-tSH-tHS-F History status: Exact match	7	1
181	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	6	1
182	HL_23010.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
183	HL_45584.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-tHH-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, no parents	50	1
184	HL_59330.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
185	HL_63355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
186	HL_10466.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, no parents	10	1
187	HL_23509.1 View exemplar Basepair signature: cSH-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
188	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	21	1
189	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
190	HL_23600.1 View exemplar Basepair signature: cWW-F-cWH-F History status: New id, 1 parent	6	1
191	HL_46984.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: New id, 1 parent	8	1
192	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
193	HL_18978.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F History status: Exact match	9	1
194	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	9	1
195	HL_11542.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	1
196	HL_24792.1 View exemplar Basepair signature: cWW-cWS-F-F-F History status: Exact match	6	1
197	HL_79615.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	1
198	HL_26934.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
199	HL_84433.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: New id, no parents	14	1
200	HL_60416.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, no parents	6	1
201	HL_07604.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	1
202	HL_19930.1 View exemplar Basepair signature: cWW-F-F History status: New id, no parents	4	1
203	HL_65266.1 View exemplar Basepair signature: cWW-F-F History status: New id, no parents	4	1
204	HL_56954.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	1
205	HL_47854.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
206	HL_76094.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match	5	1
207	HL_91014.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent Pseudoknot (1)	7	1
208	HL_07903.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
209	HL_65313.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
210	HL_42986.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	19	1
211	HL_69273.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: New id, 1 parent	9	1
212	HL_85461.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	15	1
213	HL_16725.1 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH-F History status: New id, no parents	23	1
214	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
215	HL_08179.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F History status: New id, no parents	11	1
216	HL_80008.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1
217	HL_03230.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-F-F-F History status: New id, 1 parent tRNA D-loop (1)	11	1
218	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	8	1
219	HL_76842.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent tRNA D-loop (1)	7	1
220	HL_52616.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: New id, 1 parent	17	1
221	HL_80411.1 View exemplar Basepair signature: cWW-F-cSH-F-F-F-F History status: Exact match tRNA D-loop (1)	9	1

Coloring options:
Nucleotide numbers

Exact match 57; New id, 1 parent 84; New id, 2 parents 40; Updated, 1 parent 19; New id, no parents 9; New id, > 2 parents 6; Updated, 2 parents 6;

Hairpin Loop Motif Atlas Release 4.0 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 4.0

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