Equivalence class NR_2.5_28129.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8AZW|1|A+ 8AZW|1|B (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Nicotiana tabacum | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the plant 60S subunit | Electron microscopy | 2.14 | 2023-06-07 |
| 2 | 8B2L|1|A3+ 8B2L|1|B3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Nicotiana tabacum | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the plant 80S ribosome | Electron microscopy | 2.2 | 2023-08-23 |
| 3 | 7QIW|1|2+ 7QIW|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Solanum lycopersicum | Eukarya | RF02543 + RF00002 | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | Electron microscopy | 2.35 | 2022-07-13 |
| 4 | 7QIZ|1|2+ 7QIZ|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Solanum lycopersicum | Eukarya | RF02543 + RF00002 | Specific features and methylation sites of a plant 80S ribosome | Electron microscopy | 2.38 | 2022-08-03 |
Release history
| Release | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_28129.3 | NR_2.5_28129.2 | 3.297 | (3) 7QIW|1|2+7QIW|1|8, 7QIZ|1|2+7QIZ|1|8, 8AZW|1|A+8AZW|1|B | (1) 8B2L|1|A3+8B2L|1|B3 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7QIW|1|2+ 7QIW|1|8 | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | ELECTRON MICROSCOPY | 2.35 | 2975 | |
| 2 | 7QIZ|1|2+ 7QIZ|1|8 | Specific features and methylation sites of a plant 80S ribosome | ELECTRON MICROSCOPY | 2.38 | 2975 | |
| 3 | 8AZW|1|A+ 8AZW|1|B | Cryo-EM structure of the plant 60S subunit | ELECTRON MICROSCOPY | 2.14 | 3066 | |
| 4 | 8B2L|1|A3+ 8B2L|1|B3 | Cryo-EM structure of the plant 80S ribosome | ELECTRON MICROSCOPY | 2.2 | 3066 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: