Equivalence class NR_2.5_65223.7 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6Q1H|1|D (rep) | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | |||
| 2 | 6Q1H|1|H | RNA (5'-R(P*AP*AP*A)-3') | Pseudomonas aeruginosa | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-ray diffraction | 1.45 | 2019-12-25 | |||
| 3 | 6P7P|1|F | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 4 | 6P7P|1|E | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 5 | 6P7P|1|D | Cyclic tri-AMP (5'-3' linked) | Escherichia coli | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 6 | 7ZGV|1|D | RNA (5'-R(P*AP*AP*A)-3') | Serratia | Serratia NucC bound to cA3 | X-ray diffraction | 1.48 | 2022-10-26 | |||
| 7 | 7SOQ|1|B | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | LaM domain of human LARP1 in complex with AAA RNA | X-ray diffraction | 1.15 | 2022-08-03 | |||
| 8 | 7SOR|1|D | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | LaM domain of human LARP1 in complex with AAA RNA | X-ray diffraction | 1.35 | 2022-08-03 | |||
| 9 | 7SOR|1|B | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | LaM domain of human LARP1 in complex with AAA RNA | X-ray diffraction | 1.35 | 2022-08-03 | |||
| 10 | 6VM6|1|J | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 11 | 6VM6|1|G | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 12 | 6WAN|1|K | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 13 | 6WAN|1|H | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 14 | 6WAN|1|G | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 15 | 6WAN|1|L | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 16 | 6WAN|1|I | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 17 | 6YWO|1|F | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 18 | 6WAN|1|J | Cyclic RNA (R(P*AP*AP*A) | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-ray diffraction | 2.4 | 2020-06-17 | |||
| 19 | 6YWO|1|E | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 20 | 6YWO|1|K | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 21 | 6VM6|1|I | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 22 | 6VM6|1|H | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 | |||
| 23 | 6YWO|1|I | RNA (5'-R(*AP*AP*A)-3') | synthetic construct | CutA in complex with A3 RNA | X-ray diffraction | 1.9 | 2020-08-05 | |||
| 24 | 3GPQ|1|E | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 25 | 3GPQ|1|F | RNA (5'-R(*AP*AP*A)-3') | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-ray diffraction | 2 | 2009-07-21 | ||||
| 26 | 6VM6|1|K | 2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3') | synthetic construct | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-ray diffraction | 2.1 | 2020-06-17 |
Release history
| Release | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_65223.7 | NR_2.5_65223.6 | 3.254 | (25) 7SOR|1|D, 7SOR|1|B, 7SOQ|1|B, 6YWO|1|K, 6YWO|1|I, 6YWO|1|F, 6YWO|1|E, 6WAN|1|L, 6WAN|1|K, 6WAN|1|J, 6WAN|1|I, 6WAN|1|H, 6WAN|1|G, 6VM6|1|K, 6VM6|1|J, 6VM6|1|I, 6VM6|1|H, 6VM6|1|G, 6Q1H|1|H, 6Q1H|1|D, 6P7P|1|F, 6P7P|1|E, 6P7P|1|D, 3GPQ|1|F, 3GPQ|1|E | (1) 7ZGV|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6YWO|1|K | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 2 | 6YWO|1|F | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 3 | 6YWO|1|I | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 4 | 6YWO|1|E | CutA in complex with A3 RNA | X-RAY DIFFRACTION | 1.9 | 3 |
| 5 | 6WAN|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 6 | 6VM6|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 7 | 6VM6|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 8 | 6VM6|1|G | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 9 | 6VM6|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 10 | 6VM6|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA | X-RAY DIFFRACTION | 2.1 | 3 |
| 11 | 6Q1H|1|D | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 12 | 6Q1H|1|H | Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.45 | 3 |
| 13 | 6P7P|1|D | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 14 | 6P7P|1|F | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 15 | 6P7P|1|E | Structure of E. coli MS115-1 NucC, cAAA-bound form | X-RAY DIFFRACTION | 1.66 | 3 |
| 16 | 6WAN|1|K | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 17 | 6WAN|1|J | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 18 | 6WAN|1|I | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 19 | 6WAN|1|H | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 20 | 6WAN|1|L | Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA | X-RAY DIFFRACTION | 2.4 | 3 |
| 21 | 7SOQ|1|B | LaM domain of human LARP1 in complex with AAA RNA | X-RAY DIFFRACTION | 1.15 | 3 |
| 22 | 7SOR|1|B | LaM domain of human LARP1 in complex with AAA RNA | X-RAY DIFFRACTION | 1.35 | 3 |
| 23 | 7SOR|1|D | LaM domain of human LARP1 in complex with AAA RNA | X-RAY DIFFRACTION | 1.35 | 3 |
| 24 | 7ZGV|1|D | Serratia NucC bound to cA3 | X-RAY DIFFRACTION | 1.48 | 3 |
| 25 | 3GPQ|1|F | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |
| 26 | 3GPQ|1|E | Crystal structure of macro domain of Chikungunya virus in complex with RNA | X-RAY DIFFRACTION | 2 | 2 |