Equivalence class NR_2.5_74981.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4RKV|1|A (rep) | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.88 | 2014-11-19 | |||
| 2 | 4RNE|1|A | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | |||
| 3 | 4RNE|1|F | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | |||
| 4 | 1J8G|1|A | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 5 | 4XK0|1|A | RNA (5'-(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-ray diffraction | 1.08 | 2015-02-11 | |||
| 6 | 4RJ1|1|A | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.92 | 2014-11-12 | |||
| 7 | 4RKV|1|B | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.88 | 2014-11-19 | |||
| 8 | 1J8G|1|B | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 9 | 4RJ1|1|B | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.92 | 2014-11-12 | |||
| 10 | 4RNE|1|B | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | |||
| 11 | 1J8G|1|C | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 12 | 4XK0|1|C | RNA (5'-(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-ray diffraction | 1.08 | 2015-02-11 | |||
| 13 | 4RNE|1|C | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | |||
| 14 | 1J8G|1|D | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 15 | 4RNE|1|D | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | |||
| 16 | 4RNE|1|E | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | |||
| 17 | 4RNE|1|G | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | |||
| 18 | 4RNE|1|H | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 |
Release history
| Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_74981.1 | NR_all_49177.1 | 2.46 | (1) 4XK0|1|A | (17) 1J8G|1|A, 1J8G|1|B, 1J8G|1|C, 1J8G|1|D, 4RJ1|1|A, 4RJ1|1|B, 4RKV|1|A, 4RKV|1|B, 4RNE|1|A, 4RNE|1|B, 4RNE|1|C, 4RNE|1|D, 4RNE|1|E, 4RNE|1|F, 4RNE|1|G, 4RNE|1|H, 4XK0|1|C | (0) |
| NR_2.5_74981.1 | NR_all_50180.1 | 2.46 | (1) 4RJ1|1|B | (17) 1J8G|1|A, 1J8G|1|B, 1J8G|1|C, 1J8G|1|D, 4RJ1|1|A, 4RKV|1|A, 4RKV|1|B, 4RNE|1|A, 4RNE|1|B, 4RNE|1|C, 4RNE|1|D, 4RNE|1|E, 4RNE|1|F, 4RNE|1|G, 4RNE|1|H, 4XK0|1|A, 4XK0|1|C | (0) |
| NR_2.5_74981.1 | NR_all_50286.1 | 2.46 | (2) 1J8G|1|B, 4RKV|1|B | (16) 1J8G|1|A, 1J8G|1|C, 1J8G|1|D, 4RJ1|1|A, 4RJ1|1|B, 4RKV|1|A, 4RNE|1|A, 4RNE|1|B, 4RNE|1|C, 4RNE|1|D, 4RNE|1|E, 4RNE|1|F, 4RNE|1|G, 4RNE|1|H, 4XK0|1|A, 4XK0|1|C | (0) |
| NR_2.5_74981.1 | NR_all_83491.2 | 2.46 | (14) 1J8G|1|A, 1J8G|1|C, 1J8G|1|D, 4RJ1|1|A, 4RKV|1|A, 4RNE|1|A, 4RNE|1|B, 4RNE|1|C, 4RNE|1|D, 4RNE|1|E, 4RNE|1|F, 4RNE|1|G, 4RNE|1|H, 4XK0|1|C | (4) 1J8G|1|B, 4RJ1|1|B, 4RKV|1|B, 4XK0|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_74981.1 | NR_2.5_09702.1 | 2.93 | (1) 4RJ1|1|B | (17) 1J8G|1|A, 1J8G|1|B, 1J8G|1|C, 1J8G|1|D, 4RJ1|1|A, 4RKV|1|A, 4RKV|1|B, 4RNE|1|A, 4RNE|1|B, 4RNE|1|C, 4RNE|1|D, 4RNE|1|E, 4RNE|1|F, 4RNE|1|G, 4RNE|1|H, 4XK0|1|A, 4XK0|1|C | (0) |
| NR_2.5_74981.1 | NR_2.5_31074.1 | 2.93 | (14) 1J8G|1|A, 1J8G|1|C, 1J8G|1|D, 4RJ1|1|A, 4RKV|1|A, 4RNE|1|A, 4RNE|1|B, 4RNE|1|C, 4RNE|1|D, 4RNE|1|E, 4RNE|1|F, 4RNE|1|G, 4RNE|1|H, 4XK0|1|C | (4) 1J8G|1|B, 4RJ1|1|B, 4RKV|1|B, 4XK0|1|A | (0) |
| NR_2.5_74981.1 | NR_2.5_41566.1 | 2.93 | (2) 1J8G|1|B, 4RKV|1|B | (16) 1J8G|1|A, 1J8G|1|C, 1J8G|1|D, 4RJ1|1|A, 4RJ1|1|B, 4RKV|1|A, 4RNE|1|A, 4RNE|1|B, 4RNE|1|C, 4RNE|1|D, 4RNE|1|E, 4RNE|1|F, 4RNE|1|G, 4RNE|1|H, 4XK0|1|A, 4XK0|1|C | (0) |
| NR_2.5_74981.1 | NR_2.5_81309.1 | 2.93 | (1) 4XK0|1|A | (17) 1J8G|1|A, 1J8G|1|B, 1J8G|1|C, 1J8G|1|D, 4RJ1|1|A, 4RJ1|1|B, 4RKV|1|A, 4RKV|1|B, 4RNE|1|A, 4RNE|1|B, 4RNE|1|C, 4RNE|1|D, 4RNE|1|E, 4RNE|1|F, 4RNE|1|G, 4RNE|1|H, 4XK0|1|C | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4RJ1|1|B | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.92 | 6 | |
| 2 | 4XK0|1|C | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-RAY DIFFRACTION | 1.08 | 6 | |
| 3 | 1J8G|1|A | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 | |
| 4 | 4RNE|1|B | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | |
| 5 | 4RNE|1|D | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | |
| 6 | 4RKV|1|A | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.88 | 10 | |
| 7 | 4RNE|1|C | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | |
| 8 | 4RNE|1|G | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | |
| 9 | 4RNE|1|H | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | |
| 10 | 4RNE|1|E | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | |
| 11 | 4RNE|1|F | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 9 | |
| 12 | 4RNE|1|A | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 9 | |
| 13 | 1J8G|1|C | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 | |
| 14 | 4RJ1|1|A | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.92 | 6 | |
| 15 | 1J8G|1|D | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 | |
| 16 | 1J8G|1|B | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 | |
| 17 | 4RKV|1|B | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.88 | 6 | |
| 18 | 4XK0|1|A | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-RAY DIFFRACTION | 1.08 | 6 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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