#IFECompound(s)RNA source organismTitleMethodResolutionDate
15UED|1|A+ 5UED|1|B (rep)RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-RAY DIFFRACTION1.52017-07-05
26C8J|1|A+ 6C8J|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-activated 2-AIpG monomer complex, 15 min soakingX-RAY DIFFRACTION1.52018-05-30
37KUP|1|A+ 7KUP|1|B5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(OMG))-3'2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.442021-09-08
47KUK|1|A+ 7KUK|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.672021-09-08
57KUM|1|A+ 7KUM|1|B5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(LCG)-3'LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.7142021-09-08
67KUL|1|A+ 7KUL|1|BDNA/RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*G)-3')DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.642021-09-08
76C8D|1|A+ 6C8D|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-dGMP complex with Mg ionX-RAY DIFFRACTION1.922018-05-30
86C8I|1|A+ 6C8I|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-activated 2-AIpG monomer complex, 5 min soakingX-RAY DIFFRACTION1.772018-05-30
95UEE|1|A+ 5UEE|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.92017-07-05
106C8L|1|A+ 6C8L|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-activated 2-AIpG monomer complex, 1h soakingX-RAY DIFFRACTION2.252018-05-30
116C8E|1|A+ 6C8E|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-imidazolium-bridged intermediate complex, 4h soakingX-RAY DIFFRACTION1.82018-05-30
126U8U|1|A+ 6U8U|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA duplex bound with TNA 3'-3' imidazolium dimerX-RAY DIFFRACTION2.42020-12-09
135UEF|1|A+ 5UEF|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12017-07-05
147KUO|1|A+ 7KUO|1|BRNA (5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(GFL))-3')FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION2.2812021-09-08
156C8K|1|A+ 6C8K|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-activated 2-AIpG monomer complex, 30 min soakingX-RAY DIFFRACTION2.262018-05-30
166CAB|1|A+ 6CAB|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA-dGMP complex with Sr ionX-RAY DIFFRACTION2.52018-05-30
176OWL|1|ARNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*R)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION22020-02-26
185UEG|1|A+ 5UEG|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligandX-RAY DIFFRACTION2.62017-07-05
195UEG|1|C+ 5UEG|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligandX-RAY DIFFRACTION2.62017-07-05

Release history

Release3.195
Date2021-09-08

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17KUO|1|A+7KUO|1|BFANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION2.2819
26CAB|1|A+6CAB|1|BRNA-dGMP complex with Sr ionX-RAY DIFFRACTION2.512
36C8L|1|A+6C8L|1|BRNA-activated 2-AIpG monomer complex, 1h soakingX-RAY DIFFRACTION2.2510
46C8K|1|A+6C8K|1|BRNA-activated 2-AIpG monomer complex, 30 min soakingX-RAY DIFFRACTION2.2610
57KUM|1|A+7KUM|1|BLNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.7149
65UEE|1|A+5UEE|1|BRNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.911
77KUK|1|A+7KUK|1|BHigh resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.6710
87KUP|1|A+7KUP|1|B2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.449
96C8E|1|A+6C8E|1|BRNA-imidazolium-bridged intermediate complex, 4h soakingX-RAY DIFFRACTION1.810
107KUL|1|A+7KUL|1|BDNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.649
116C8J|1|A+6C8J|1|BRNA-activated 2-AIpG monomer complex, 15 min soakingX-RAY DIFFRACTION1.510
126C8D|1|A+6C8D|1|BRNA-dGMP complex with Mg ionX-RAY DIFFRACTION1.9210
135UEG|1|C+5UEG|1|DRNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligandX-RAY DIFFRACTION2.611
145UEG|1|A+5UEG|1|BRNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligandX-RAY DIFFRACTION2.611
155UEF|1|A+5UEF|1|BRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.111
165UED|1|A+5UED|1|BRNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-RAY DIFFRACTION1.511
176C8I|1|A+6C8I|1|BRNA-activated 2-AIpG monomer complex, 5 min soakingX-RAY DIFFRACTION1.7710
186U8U|1|A+6U8U|1|BRNA duplex bound with TNA 3'-3' imidazolium dimerX-RAY DIFFRACTION2.410
196OWL|1|ARNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION29