Equivalence class NR_4.0_03510.49 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A6 (rep) | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 2 | 5TBW|1|sR | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2017-07-26 |
| 3 | 4V88|1|A2 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 4 | 5TBW|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2017-07-26 |
| 5 | 7OSA|1|18S | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
| 6 | 6HHQ|1|sR | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2019-02-20 |
| 7 | 5OBM|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 2017-12-13 |
| 8 | 5I4L|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2016-06-22 |
| 9 | 5MEI|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 2017-06-28 |
| 10 | 5NDW|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 2017-12-13 |
| 11 | 5LYB|1|6 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 2016-11-23 |
| 12 | 5I4L|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2016-06-22 |
| 13 | 5OBM|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 2017-12-13 |
| 14 | 7OSM|1|18S | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
| 15 | 5MEI|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 2017-06-28 |
| 16 | 5ON6|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 2018-02-28 |
| 17 | 5NDW|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 2017-12-13 |
| 18 | 6HHQ|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2019-02-20 |
| 19 | 5LYB|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 2016-11-23 |
| 20 | 5NDV|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2017-12-13 |
| 21 | 5NDV|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2017-12-13 |
| 22 | 5ON6|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 2018-02-28 |
| 23 | 5NDG|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 2017-12-13 |
| 24 | 5NDG|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 2017-12-13 |
| 25 | 5TGM|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 2017-01-18 |
| 26 | 5TGM|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 2017-01-18 |
| 27 | 4V7R|1|A1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome. | X-ray diffraction | 4 | 2014-07-09 |
| 28 | 4V7R|1|C1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome. | X-ray diffraction | 4 | 2014-07-09 |
| 29 | 5DAT|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 2016-08-31 |
| 30 | 5TGA|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 2016-11-23 |
| 31 | 5DGE|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 2017-01-25 |
| 32 | 5DGV|1|6 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 2016-12-14 |
| 33 | 5DGF|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 2016-12-14 |
| 34 | 5DC3|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 2016-06-01 |
| 35 | 5DAT|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 2016-08-31 |
| 36 | 5TGA|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 2016-11-23 |
| 37 | 5DGV|1|2 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 2016-12-14 |
| 38 | 5DGE|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 2017-01-25 |
| 39 | 5DGF|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 2016-12-14 |
| 40 | 5DC3|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 2016-06-01 |
| 41 | 7ZW0|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA (RDN18-1) | Saccharomyces cerevisiae W303 | Eukarya | RF01960 | FAP-80S Complex - Rotated state | Electron microscopy | 2.4 | 2022-10-05 |
| 42 | 7PZY|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Candida albicans SC5314 | Eukarya | RF01960 | Structure of the vacant Candida albicans 80S ribosome | Electron microscopy | 2.32 | 2022-05-18 |
| 43 | 7Q08|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Candida albicans SC5314 | Eukarya | RF01960 | Structure of Candida albicans 80S ribosome in complex with cycloheximide | Electron microscopy | 2.56 | 2022-05-25 |
| 44 | 6T4Q|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | Electron microscopy | 2.6 | 2019-12-25 |
| 45 | 7MPJ|1|B5 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Stm1 bound vacant 80S structure isolated from nop1-D243A | Electron microscopy | 2.7 | 2022-05-11 |
| 46 | 7Q0F|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Candida albicans SC5314 | Eukarya | RF01960 | Structure of Candida albicans 80S ribosome in complex with phyllanthoside | Electron microscopy | 2.64 | 2022-05-18 |
| 47 | 7Q0R|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Candida albicans SC5314 | Eukarya | RF01960 | Structure of the Candida albicans 80S ribosome in complex with blasticidin s | Electron microscopy | 2.67 | 2022-05-25 |
| 48 | 7Q0P|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Candida albicans SC5314 | Eukarya | RF01960 | Structure of the Candida albicans 80S ribosome in complex with anisomycin | Electron microscopy | 2.77 | 2022-05-18 |
| 49 | 6WOO|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | Electron microscopy | 2.9 | 2020-09-23 |
| 50 | 4U4R|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 51 | 6TB3|1|2 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | Electron microscopy | 2.8 | 2020-04-22 |
| 52 | 6SNT|1|2 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome stalled on SDD1 mRNA. | Electron microscopy | 2.8 | 2020-03-04 |
| 53 | 4U4R|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 54 | 4U3U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 55 | 7A1G|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex | Electron microscopy | 3 | 2020-10-14 |
| 56 | 6ZVI|1|h | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Mbf1-ribosome complex | Electron microscopy | 3 | 2020-09-09 |
| 57 | 4U3U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 58 | 7N8B|1|B5 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cycloheximide bound vacant 80S structure isolated from cbf5-D95A | Electron microscopy | 3.05 | 2022-05-11 |
| 59 | 7MPI|1|B5 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Stm1 bound vacant 80S structure isolated from cbf5-D95A | Electron microscopy | 3.05 | 2022-05-11 |
| 60 | 8C01|1|2 | Small subunit ribosomal RNA | 18S rRNA precursor | Saccharomyces cerevisiae | Eukarya | RF01960 | Enp1TAP_A population of yeast small ribosomal subunit precursors | Electron microscopy | 2.7 | 2022-12-28 |
| 61 | 4U3M|1|6 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 62 | 4U4Q|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 63 | 4U4U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 64 | 4U52|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 65 | 4U3M|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 66 | 7RR5|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of ribosomal complex bound with Rbg1/Tma46 | Electron microscopy | 3.23 | 2021-11-10 |
| 67 | 4U52|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 68 | 4U4U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 69 | 4U6F|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 70 | 4U4Q|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 71 | 4U4N|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 72 | 6Q8Y|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | Electron microscopy | 3.1 | 2019-03-13 |
| 73 | 4U6F|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 74 | 4U4Z|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 75 | 6XIR|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | Electron microscopy | 3.2 | 2020-08-26 |
| 76 | 7B7D|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | Electron microscopy | 3.3 | 2021-03-10 |
| 77 | 6SV4|1|2b | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 78 | 6SV4|1|2c | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 79 | 4U4Y|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 80 | 4U3N|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 81 | 4U4Z|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 82 | 6T7T|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of yeast 80S ribosome stalled on poly(A) tract. | Electron microscopy | 3.1 | 2019-12-25 |
| 83 | 4U55|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 84 | 5M1J|1|22 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 2017-01-18 |
| 85 | 4U4N|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 86 | 6T7I|1|C2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | Electron microscopy | 3.2 | 2019-12-25 |
| 87 | 4U50|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 88 | 4U51|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 89 | 4U3N|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 90 | 6S47|1|BA | Small subunit ribosomal RNA | 18S rRNA (1707-MER) | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | Electron microscopy | 3.28 | 2019-07-24 |
| 91 | 4U4Y|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 92 | 4U51|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 93 | 8C00|1|2 | Small subunit ribosomal RNA | 18S rRNA precursor | Saccharomyces cerevisiae | Eukarya | RF01960 | Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21 | Electron microscopy | 2.9 | 2022-12-28 |
| 94 | 4U55|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 95 | 6TNU|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | Electron microscopy | 3.1 | 2020-04-22 |
| 96 | 6Z6K|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | Electron microscopy | 3.4 | 2020-07-29 |
| 97 | 6Z6J|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | Electron microscopy | 3.4 | 2020-07-29 |
| 98 | 6FAI|1|2 | Small subunit ribosomal RNA | 20S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | Electron microscopy | 3.4 | 2018-02-28 |
| 99 | 4U50|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 100 | 5JUP|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 2016-10-05 |
| 101 | 4U53|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2014-10-22 |
| 102 | 6RBD|1|2 | Small subunit ribosomal RNA | 20S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles | Electron microscopy | 3.47 | 2019-06-26 |
| 103 | 4U53|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2014-10-22 |
| 104 | 6SV4|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 105 | 4U56|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 2014-10-22 |
| 106 | 6LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | Electron microscopy | 3.2 | 2020-09-16 |
| 107 | 4U56|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 2014-10-22 |
| 108 | 7NRC|1|S2 | Small subunit ribosomal RNA | 18S rRNA (1771-MER) | Saccharomyces cerevisiae S288C | Eukarya | RF01960 | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A | Electron microscopy | 3.9 | 2021-05-05 |
| 109 | 5MC6|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | Electron microscopy | 3.8 | 2017-01-18 |
| 110 | 6KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | Electron microscopy | 3.4 | 2020-08-05 |
| 111 | 6T83|1|2b | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | Electron microscopy | 4 | 2019-12-25 |
| 112 | 6EML|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae | Electron microscopy | 3.6 | 2017-11-29 |
| 113 | 6T83|1|a | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | Electron microscopy | 4 | 2019-12-25 |
| 114 | 5JUO|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | Electron microscopy | 4 | 2016-10-05 |
| 115 | 6RBE|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles | Electron microscopy | 3.8 | 2019-06-26 |
| 116 | 5JUT|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | Electron microscopy | 4 | 2016-10-05 |
| 117 | 5JUU|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | Electron microscopy | 4 | 2016-10-05 |
| 118 | 6Y7C|1|2 | Small subunit ribosomal RNA | 20S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait) | Electron microscopy | 3.8 | 2020-03-18 |
| 119 | 6GQB|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | Electron microscopy | 3.9 | 2018-07-11 |
| 120 | 7WTR|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3 | Electron microscopy | 3.5 | 2022-10-19 |
| 121 | 6GQV|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | Electron microscopy | 4 | 2018-07-11 |
| 122 | 6ZQG|1|D3 | Small subunit ribosomal RNA | 18S rRNA, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | Electron microscopy | 3.5 | 2020-09-23 |
| 123 | 4U4O|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 2014-10-22 |
| 124 | 7WTN|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2) | Electron microscopy | 3.4 | 2022-10-19 |
| 125 | 7WTL|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D | Electron microscopy | 3.3 | 2022-10-19 |
| 126 | 4U4O|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 2014-10-22 |
| 127 | 7WTO|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2) | Electron microscopy | 3.5 | 2022-10-19 |
| 128 | 6LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) | Electron microscopy | 3.7 | 2020-09-16 |
| 129 | 7WTP|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2) | Electron microscopy | 3.8 | 2022-10-19 |
| 130 | 7WTM|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E | Electron microscopy | 3.5 | 2022-10-19 |
| 131 | 7WTQ|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2) | Electron microscopy | 3.7 | 2022-10-19 |
| 132 | 7D4I|1|SA | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 | Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F) | Electron microscopy | 4 | 2021-10-06 |
| 133 | 6ZQD|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 | Electron microscopy | 3.8 | 2020-09-23 |
| 134 | 7AJU|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 | Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome) | Electron microscopy | 3.8 | 2020-12-30 |
| 135 | 6LQS|1|SA | Small subunit ribosomal RNA | 18S pre-rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) | Electron microscopy | 3.8 | 2020-09-16 |
| 136 | 5LL6|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation | Electron microscopy | 3.9 | 2017-04-12 |
| 137 | 7SUK|1|8+ 7SUK|1|L0+ 7SUK|1|L2 | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells | Electron microscopy | 3.99 | 2022-07-06 |
| 138 | 6ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4 | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S rRNA, 5ETS RNA, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2 | Electron microscopy | 3.9 | 2020-09-23 |
| 139 | 6ZQC|1|D3 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1 | Electron microscopy | 3.8 | 2020-09-23 |
| 140 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | The complete structure of the small subunit processome | Electron microscopy | 3.8 | 2017-09-27 |
Release history
Parents
Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6SV4|1|2c | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 1758 | |
| 2 | 6SV4|1|2b | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 1758 | |
| 3 | 6ZVI|1|h | Mbf1-ribosome complex | ELECTRON MICROSCOPY | 3 | 1758 | |
| 4 | 6XIR|1|2 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 3.2 | 1708 | |
| 5 | 4V7R|1|C1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 | |
| 6 | 5NDV|1|6 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1683 | |
| 7 | 5DAT|1|6 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1796 | |
| 8 | 5DGF|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1796 | |
| 9 | 5DC3|1|6 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1796 | |
| 10 | 5DGE|1|6 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1796 | |
| 11 | 5DGV|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1796 | |
| 12 | 5TGM|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1796 | |
| 13 | 5TGA|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1796 | |
| 14 | 5LYB|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1796 | |
| 15 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1770 | |
| 16 | 4U6F|1|6 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 17 | 4U3N|1|6 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 18 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 | |
| 19 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 | |
| 20 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 21 | 4U4Y|1|6 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 22 | 5I4L|1|6 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 23 | 4U4N|1|6 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 24 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 25 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 26 | 4U51|1|6 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 27 | 4U55|1|6 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 28 | 4U4Z|1|6 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 29 | 5TBW|1|sR | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1783 | |
| 30 | 6HHQ|1|sR | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1783 | |
| 31 | 5MEI|1|6 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1783 | |
| 32 | 5ON6|1|6 | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1783 | |
| 33 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 34 | 4U56|1|6 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1795 | |
| 35 | 4U53|1|6 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 36 | 4U50|1|6 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 37 | 4U4O|1|6 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1791 | |
| 38 | 5OBM|1|6 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 1739 | |
| 39 | 5NDG|1|6 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 1700 | |
| 40 | 5NDW|1|6 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 1736 | |
| 41 | 5NDG|1|2 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 1688 | |
| 42 | 5NDW|1|2 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 1770 | |
| 43 | 4U4O|1|2 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1750 | |
| 44 | 5DGE|1|2 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1782 | |
| 45 | 5DC3|1|2 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1782 | |
| 46 | 5DGV|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1782 | |
| 47 | 5LYB|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1782 | |
| 48 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1768 | |
| 49 | 5TGA|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1782 | |
| 50 | 5I4L|1|2 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 51 | 4U4N|1|2 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 | |
| 52 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 53 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 54 | 4U3N|1|2 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 55 | 4U6F|1|2 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 56 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 | |
| 57 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 | |
| 58 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 59 | 4U4Y|1|2 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 60 | 4U4Z|1|2 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 | |
| 61 | 5MEI|1|A | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1781 | |
| 62 | 5ON6|1|A | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 63 | 6HHQ|1|A | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 64 | 5TBW|1|A | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1781 | |
| 65 | 4U56|1|2 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1750 | |
| 66 | 4U55|1|2 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 67 | 4U51|1|2 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 68 | 4U53|1|2 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1750 | |
| 69 | 4U50|1|2 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 70 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 71 | 5TGM|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1782 | |
| 72 | 5DAT|1|2 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1782 | |
| 73 | 5DGF|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1782 | |
| 74 | 5OBM|1|2 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 1712 | |
| 75 | 5NDV|1|2 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1712 | |
| 76 | 5JUP|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 1781 | |
| 77 | 5JUT|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 1781 | |
| 78 | 5JUO|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 1781 | |
| 79 | 7MPI|1|B5 | Stm1 bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 1757 | |
| 80 | 7MPJ|1|B5 | Stm1 bound vacant 80S structure isolated from nop1-D243A | ELECTRON MICROSCOPY | 2.7 | 1744 | |
| 81 | 7N8B|1|B5 | Cycloheximide bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 1759 | |
| 82 | 4V7R|1|A1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 | |
| 83 | 6RBE|1|2 | State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles | ELECTRON MICROSCOPY | 3.8 | 1750 | |
| 84 | 7A1G|1|2 | Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex | ELECTRON MICROSCOPY | 3 | 1771 | |
| 85 | 7PZY|1|A | Structure of the vacant Candida albicans 80S ribosome | ELECTRON MICROSCOPY | 2.32 | 1692 | |
| 86 | 7Q0P|1|A | Structure of the Candida albicans 80S ribosome in complex with anisomycin | ELECTRON MICROSCOPY | 2.77 | 1692 | |
| 87 | 7Q0R|1|A | Structure of the Candida albicans 80S ribosome in complex with blasticidin s | ELECTRON MICROSCOPY | 2.67 | 1692 | |
| 88 | 7Q0F|1|A | Structure of Candida albicans 80S ribosome in complex with phyllanthoside | ELECTRON MICROSCOPY | 2.64 | 1692 | |
| 89 | 7Q08|1|A | Structure of Candida albicans 80S ribosome in complex with cycloheximide | ELECTRON MICROSCOPY | 2.56 | 1692 | |
| 90 | 7OSM|1|18S | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 1732 | |
| 91 | 6GQV|1|2 | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | ELECTRON MICROSCOPY | 4 | 1776 | |
| 92 | 6GQB|1|2 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | ELECTRON MICROSCOPY | 3.9 | 1776 | |
| 93 | 7OSA|1|18S | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 1717 | |
| 94 | 7ZW0|1|2 | FAP-80S Complex - Rotated state | ELECTRON MICROSCOPY | 2.4 | 1765 | |
| 95 | 7RR5|1|C2 | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 1771 | |
| 96 | 6TNU|1|2 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | ELECTRON MICROSCOPY | 3.1 | 1771 | |
| 97 | 7NRC|1|S2 | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A | ELECTRON MICROSCOPY | 3.9 | 1771 | |
| 98 | 7B7D|1|2 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | ELECTRON MICROSCOPY | 3.3 | 1771 | |
| 99 | 6T7T|1|C2 | Structure of yeast 80S ribosome stalled on poly(A) tract. | ELECTRON MICROSCOPY | 3.1 | 1771 | |
| 100 | 6T7I|1|C2 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | ELECTRON MICROSCOPY | 3.2 | 1771 | |
| 101 | 6T4Q|1|C2 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 1771 | |
| 102 | 6SNT|1|2 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 1771 | |
| 103 | 6TB3|1|2 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 1771 | |
| 104 | 6T83|1|2b | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | ELECTRON MICROSCOPY | 4 | 1771 | |
| 105 | 6Q8Y|1|2 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | ELECTRON MICROSCOPY | 3.1 | 1767 | |
| 106 | 6Z6K|1|C2 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3.4 | 1700 | |
| 107 | 6Z6J|1|C2 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | ELECTRON MICROSCOPY | 3.4 | 1700 | |
| 108 | 6S47|1|BA | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | ELECTRON MICROSCOPY | 3.28 | 1707 | |
| 109 | 6T83|1|a | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | ELECTRON MICROSCOPY | 4 | 1758 | |
| 110 | 6SV4|1|2 | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 1758 | |
| 111 | 5M1J|1|22 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 1781 | |
| 112 | 6WOO|1|2 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | ELECTRON MICROSCOPY | 2.9 | 1780 | |
| 113 | 5JUU|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 1781 | |
| 114 | 5MC6|1|2 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | ELECTRON MICROSCOPY | 3.8 | 1767 | |
| 115 | 5LL6|1|2 | Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation | ELECTRON MICROSCOPY | 3.9 | 1325 | |
| 116 | 6EML|1|2 | Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae | ELECTRON MICROSCOPY | 3.6 | 1675 | |
| 117 | 8C01|1|2 | Enp1TAP_A population of yeast small ribosomal subunit precursors | ELECTRON MICROSCOPY | 2.7 | 1545 | |
| 118 | 8C00|1|2 | Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21 | ELECTRON MICROSCOPY | 2.9 | 1425 | |
| 119 | 6Y7C|1|2 | Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait) | ELECTRON MICROSCOPY | 3.8 | 1731 | |
| 120 | 6RBD|1|2 | State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles | ELECTRON MICROSCOPY | 3.47 | 1777 | |
| 121 | 6FAI|1|2 | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 1775 | |
| 122 | 7WTR|1|C2 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3 | ELECTRON MICROSCOPY | 3.5 | 1298 | |
| 123 | 7WTP|1|C2 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2) | ELECTRON MICROSCOPY | 3.8 | 1255 | |
| 124 | 7WTQ|1|C2 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2) | ELECTRON MICROSCOPY | 3.7 | 1255 | |
| 125 | 7WTN|1|C2 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2) | ELECTRON MICROSCOPY | 3.4 | 1200 | |
| 126 | 7WTO|1|C2 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2) | ELECTRON MICROSCOPY | 3.5 | 1200 | |
| 127 | 7WTM|1|C2 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E | ELECTRON MICROSCOPY | 3.5 | 1106 | |
| 128 | 7WTL|1|C2 | Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D | ELECTRON MICROSCOPY | 3.3 | 1102 | |
| 129 | 6ZQG|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | ELECTRON MICROSCOPY | 3.5 | 1387 | |
| 130 | 6ZQD|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 | ELECTRON MICROSCOPY | 3.8 | 1409 | |
| 131 | 7AJU|1|D3 | Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome) | ELECTRON MICROSCOPY | 3.8 | 1409 | |
| 132 | 7D4I|1|SA | Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F) | ELECTRON MICROSCOPY | 4 | 1337 | |
| 133 | 6LQS|1|SA | Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) | ELECTRON MICROSCOPY | 3.8 | 1249 | |
| 134 | 6ZQC|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1 | ELECTRON MICROSCOPY | 3.8 | 1327 | |
| 135 | 6ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2 | ELECTRON MICROSCOPY | 3.9 | 1198 | |
| 136 | 6KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | ELECTRON MICROSCOPY | 3.4 | 1310 | |
| 137 | 6LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | ELECTRON MICROSCOPY | 3.2 | 1325 | |
| 138 | 6LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) | ELECTRON MICROSCOPY | 3.7 | 1242 | |
| 139 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | The complete structure of the small subunit processome | ELECTRON MICROSCOPY | 3.8 | 1025 | |
| 140 | 7SUK|1|8+ 7SUK|1|L0+ 7SUK|1|L2 | Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells | ELECTRON MICROSCOPY | 3.99 | 1192 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: