#IFECompound(s)RNA source organismTitleMethodResolutionDate
12NVQ|1|R (rep)5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.92006-12-12
26UPZ|1|RRNAsynthetic constructRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-RAY DIFFRACTION3.12020-06-10
32NVX|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.62006-12-19
42E2I|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.412006-12-19
56UQ0|1|RRNAsynthetic constructRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-RAY DIFFRACTION3.562020-06-10
67KEE|1|RRNAsynthetic constructRNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-siteX-RAY DIFFRACTION3.452021-06-23
72E2H|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.952006-12-12
87KED|1|RRNAsynthetic constructRNA polymerase II elongation complex with unnatural base dTPT3X-RAY DIFFRACTION3.62021-06-23
97KEF|1|RRNAsynthetic constructRNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing stateX-RAY DIFFRACTION3.892021-06-23
101SFO|1|RRNA STRANDRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.612004-03-02
111R9T|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.52004-11-16
122YU9|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.42007-04-24
137OOB|1|PRNAHomo sapiensPol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2)ELECTRON MICROSCOPY2.72021-10-13
147OO3|1|PRNAHomo sapiensPol II-CSB-CSA-DDB1-UVSSA (Structure1)ELECTRON MICROSCOPY2.82021-10-06
156H67|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)ELECTRON MICROSCOPY3.62018-08-29

Release history

Release3.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.248
Date2021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_34359.7NR_4.0_34359.63.200(14) 7KEF|1|R, 7KEE|1|R, 7KED|1|R, 6UQ0|1|R, 6UPZ|1|R, 6H67|1|R, 2YU9|1|R, 2NVX|1|R, 2NVQ|1|R, 2E2I|1|R, 2E2H|1|R, 1SFO|1|R, 1R9T|1|R, 7OO3|1|P(1) 7OOB|1|P(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11R9T|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.510
21SFO|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.6110
36H67|1|RYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)ELECTRON MICROSCOPY3.69
47KEE|1|RRNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-siteX-RAY DIFFRACTION3.4510
56UQ0|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-RAY DIFFRACTION3.569
67KED|1|RRNA polymerase II elongation complex with unnatural base dTPT3X-RAY DIFFRACTION3.610
72E2I|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.4110
82YU9|1|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.410
92NVX|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.610
102E2H|1|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.9510
117KEF|1|RRNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing stateX-RAY DIFFRACTION3.8910
122NVQ|1|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.910
137OO3|1|PPol II-CSB-CSA-DDB1-UVSSA (Structure1)ELECTRON MICROSCOPY2.810
147OOB|1|PPol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2)ELECTRON MICROSCOPY2.710
156UPZ|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-RAY DIFFRACTION3.110