NR_4.0_58986.3

Members (38)
History
Heat map

#	IFE	Standardized name	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	1J5A\|A (rep)	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA	X-ray diffraction	3.5	2002-03-08
2	1JZX\|A	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria	X-ray diffraction	3.1	2001-10-26
3	1JZY\|A	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria	X-ray diffraction	3.5	2001-10-26
4	1JZZ\|A	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria	X-ray diffraction	3.8	2001-10-26
5	1K01\|A	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria	X-ray diffraction	3.5	2001-10-26
6	1NJM\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin	X-ray diffraction	3.6	2003-02-11
7	1NJN\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin	X-ray diffraction	3.7	2003-02-11
8	1NJO\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)	X-ray diffraction	3.7	2003-02-11
9	1NJP\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)	X-ray diffraction	3.5	2003-02-11
10	1NKW\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans	X-ray diffraction	3.1	2003-02-11
11	1NWX\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773	X-ray diffraction	3.5	2003-03-18
12	1NWY\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN	X-ray diffraction	3.3	2003-03-18
13	1OND\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC	X-ray diffraction	3.4	2003-04-15
14	1P9X\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC	X-ray diffraction	3.4	2003-08-05
15	1SM1\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN	X-ray diffraction	3.42	2004-08-03
16	1XBP\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin	X-ray diffraction	3.5	2005-03-01
17	1Y69\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans	X-ray diffraction	3.33	2005-03-01
18	1Z58\|2	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Crystal structure of a complex of the ribosome large subunit with rapamycin	X-ray diffraction	3.8	2005-06-28
19	2AAR\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.	X-ray diffraction	3.5	2005-08-23
20	2D3O\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans	X-ray diffraction	3.35	2005-12-06
21	2O43\|A	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamine	X-ray diffraction	3.6	2007-12-04
22	2O44\|A	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin	X-ray diffraction	3.3	2007-12-04
23	2O45\|A	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874	X-ray diffraction	3.6	2007-12-04
24	2OGM\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519	X-ray diffraction	3.5	2007-05-01
25	2OGN\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080	X-ray diffraction	3.56	2007-05-01
26	2OGO\|0	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)	X-ray diffraction	3.66	2007-05-01
27	2ZJP\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans	X-ray diffraction	3.7	2008-06-17
28	2ZJQ\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit	X-ray diffraction	3.3	2008-06-17
29	2ZJR\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans	X-ray diffraction	2.91	2008-06-17
30	3CF5\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans	X-ray diffraction	3.3	2008-06-17
31	3DLL\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning	X-ray diffraction	3.5	2008-09-16
32	3FWO\|A	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The large ribosomal subunit from Deinococcus radiodurans complexed with Methymycin	X-ray diffraction	3.71	2010-01-19
33	3JQ4\|A	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidin	X-ray diffraction	3.52	2010-09-08
34	3PIO\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit	X-ray diffraction	3.25	2011-02-23
35	3PIP\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit	X-ray diffraction	3.45	2011-02-23
36	4IO9\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans	X-ray diffraction	3.2	2013-03-06
37	4IOA\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans	X-ray diffraction	3.2	2013-03-06
38	4IOC\|X	Large subunit ribosomal RNA	Deinococcus radiodurans	Bacteria	RF02541	Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans	X-ray diffraction	3.6	2013-03-06

Release history

Release	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14	1.15	1.16	1.17	1.18	1.19	1.20	1.21	1.22	1.23	1.24	1.25	1.26	1.27	1.28	1.29	1.30	1.31	1.32	1.33	1.34	1.35	1.36	1.37	1.38	1.39	1.40	1.41	1.42	1.43	1.44	1.45	1.46	1.47	1.48	1.49	1.50	1.51	1.52	1.53	1.54	1.55	1.56	1.57	1.58	1.59	1.60	1.61	1.62	1.63	1.64	1.65	1.66	1.67	1.68	1.69	1.70	1.71	1.72	1.73	1.74	1.75	1.76	1.77	1.78	1.79	1.80	1.81	1.82	1.83	1.84	1.85	1.86	1.87	1.88	1.89
Date	2013-03-09	2013-03-16	2013-03-23	2013-03-30	2013-04-06	2013-04-13	2013-04-20	2013-04-27	2013-05-04	2013-05-11	2013-05-18	2013-05-25	2013-06-01	2013-06-08	2013-06-15	2013-06-22	2013-06-29	2013-07-06	2013-07-13	2013-07-20	2013-07-27	2013-08-03	2013-08-10	2013-08-17	2013-08-24	2013-08-31	2013-09-07	2013-09-14	2013-09-21	2013-09-28	2013-10-05	2013-10-12	2013-10-19	2013-10-26	2013-11-09	2013-11-16	2013-11-23	2013-11-30	2013-12-07	2013-12-14	2013-12-21	2013-12-28	2014-01-04	2014-01-11	2014-01-18	2014-01-25	2014-02-01	2014-02-08	2014-02-15	2014-02-22	2014-03-01	2014-03-08	2014-03-17	2014-03-22	2014-03-29	2014-04-05	2014-04-12	2014-04-19	2014-04-26	2014-05-03	2014-05-10	2014-05-17	2014-05-31	2014-06-07	2014-06-13	2014-06-20	2014-06-27	2014-07-04	2014-07-18	2014-07-25	2014-08-01	2014-08-08	2014-08-15	2014-08-22	2014-08-29	2014-09-05	2014-09-12	2014-09-19	2014-09-26	2014-10-03	2014-10-10	2014-10-17	2014-10-24	2014-10-31	2014-11-07	2014-11-14	2014-11-21	2014-11-28	2014-12-05

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	Length

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_58986.3 Obsolete

Release history

Parents

Children