BGSU RNA Site //

Equivalence class NR_4.0_96870.1 Current

#IFECompound(s)RNA source organismTitleMethodResolutionDate
17ST2|1|5 (rep)tRNA Pro, mRNAEscherichia coli K-12Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)ELECTRON MICROSCOPY2.92022-02-23
27ST6|1|5tRNA Pro, mRNAEscherichia coli K-12Pre translocation, non-rotated 70S ribosome (Structure I)ELECTRON MICROSCOPY32022-02-23
37LV0|1|5tRNAPro, mRNAEscherichia coli K-12Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)ELECTRON MICROSCOPY3.22021-07-28
47K54|1|5tRNAPro, mRNAEscherichia coli K-12Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)ELECTRON MICROSCOPY3.22021-07-28
57K53|1|7tRNAPro, mRNAEscherichia coli K-12Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)ELECTRON MICROSCOPY3.22021-07-28
67SSO|1|5tRNA Pro, mRNAEscherichia coli K-12Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)ELECTRON MICROSCOPY3.22022-02-23
77SSN|1|5tRNA Pro, mRNAEscherichia coli K-12Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)ELECTRON MICROSCOPY3.22022-02-23
87ST7|1|5tRNA Pro, mRNAEscherichia coli K-12Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)ELECTRON MICROSCOPY3.22022-02-23
97K55|1|5tRNAPro, mRNAEscherichia coli K-12Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)ELECTRON MICROSCOPY3.32021-07-28
107SSD|1|5tRNA Pro, mRNAEscherichia coli K-12Mid translocation intermediate with EF-G bound with GDP (Structure IV)ELECTRON MICROSCOPY3.32022-02-23
117K52|1|5tRNAPro, mRNAEscherichia coli K-12Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)ELECTRON MICROSCOPY3.42021-07-28
127K50|1|7tRNAPro, mRNAEscherichia coli K-12Pre-translocation non-frameshifting(CCA-A) complex (Structure I)ELECTRON MICROSCOPY3.42021-07-28
137K51|1|5tRNAPro, mRNAEscherichia coli K-12Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)ELECTRON MICROSCOPY3.52021-07-28
147SSL|1|5tRNA Pro, mRNAEscherichia coli K-12Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)ELECTRON MICROSCOPY3.82022-02-23
157SSW|1|5tRNA Pro, mRNAEscherichia coli K-12Late translocation intermediate with EF-G dissociated (Structure VI)ELECTRON MICROSCOPY3.82022-02-23
167SS9|1|5tRNA Pro, mRNAEscherichia coli K-12Late translocation intermediate with EF-G partially dissociated (Structure V)ELECTRON MICROSCOPY3.92022-02-23

Release history

Release3.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.247
Date2022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_96870.1NR_4.0_41750.13.219(7) 7K50|1|7, 7K53|1|7, 7LV0|1|5, 7K52|1|5, 7K55|1|5, 7K51|1|5, 7K54|1|5(9) 7SS9|1|5, 7SSW|1|5, 7SSO|1|5, 7ST7|1|5, 7SSN|1|5, 7ST6|1|5, 7SSL|1|5, 7ST2|1|5, 7SSD|1|5(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17SSO|1|5Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)ELECTRON MICROSCOPY3.277
27ST6|1|5Pre translocation, non-rotated 70S ribosome (Structure I)ELECTRON MICROSCOPY377
37K50|1|7Pre-translocation non-frameshifting(CCA-A) complex (Structure I)ELECTRON MICROSCOPY3.477
47K53|1|7Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)ELECTRON MICROSCOPY3.277
57K52|1|5Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)ELECTRON MICROSCOPY3.477
67K55|1|5Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)ELECTRON MICROSCOPY3.377
77ST2|1|5Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)ELECTRON MICROSCOPY2.977
87K54|1|5Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)ELECTRON MICROSCOPY3.277
97K51|1|5Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)ELECTRON MICROSCOPY3.577
107SSD|1|5Mid translocation intermediate with EF-G bound with GDP (Structure IV)ELECTRON MICROSCOPY3.377
117SS9|1|5Late translocation intermediate with EF-G partially dissociated (Structure V)ELECTRON MICROSCOPY3.977
127SSW|1|5Late translocation intermediate with EF-G dissociated (Structure VI)ELECTRON MICROSCOPY3.877
137LV0|1|5Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)ELECTRON MICROSCOPY3.277
147SSN|1|5Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)ELECTRON MICROSCOPY3.277
157ST7|1|5Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)ELECTRON MICROSCOPY3.276
167SSL|1|5Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)ELECTRON MICROSCOPY3.877