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Equivalence class NR_all_52453.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13OL9|1|B+ 3OL9|1|F+ 3OL9|1|C+ 3OL9|1|G+ 3OL9|1|D+ 3OL9|1|H (rep)RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*(O2C))-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complex with 3'-deoxy-CTPX-ray diffraction2.252010-12-22
23OL9|1|J+ 3OL9|1|N+ 3OL9|1|K+ 3OL9|1|O+ 3OL9|1|L+ 3OL9|1|PRNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*(O2C))-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complex with 3'-deoxy-CTPX-ray diffraction2.252010-12-22
33OLB|1|J+ 3OLB|1|N+ 3OLB|1|K+ 3OLB|1|O+ 3OLB|1|L+ 3OLB|1|PRNA (5'-R(*AP*AP*GP*UP*CP*U*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctpX-ray diffraction2.412010-12-22
43OLB|1|B+ 3OLB|1|F+ 3OLB|1|C+ 3OLB|1|G+ 3OLB|1|D+ 3OLB|1|HRNA (5'-R(*AP*AP*GP*UP*CP*U*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctpX-ray diffraction2.412010-12-22
53OL6|1|B+ 3OL6|1|F+ 3OL6|1|C+ 3OL6|1|G+ 3OL6|1|D+ 3OL6|1|HRNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complexX-ray diffraction2.52010-12-22
63OL6|1|J+ 3OL6|1|N+ 3OL6|1|K+ 3OL6|1|O+ 3OL6|1|L+ 3OL6|1|PRNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complexX-ray diffraction2.52010-12-22
73OL8|1|B+ 3OL8|1|F+ 3OL8|1|C+ 3OL8|1|G+ 3OL8|1|D+ 3OL8|1|HRNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complex with CTP-MnX-ray diffraction2.752010-12-22
83OL7|1|J+ 3OL7|1|N+ 3OL7|1|K+ 3OL7|1|O+ 3OL7|1|L+ 3OL7|1|PRNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complex with CTPX-ray diffraction2.72010-12-22
93OL7|1|B+ 3OL7|1|F+ 3OL7|1|C+ 3OL7|1|G+ 3OL7|1|D+ 3OL7|1|HRNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complex with CTPX-ray diffraction2.72010-12-22
103OL8|1|J+ 3OL8|1|N+ 3OL8|1|K+ 3OL8|1|O+ 3OL8|1|L+ 3OL8|1|PRNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')Poliovirus polymerase elongation complex with CTP-MnX-ray diffraction2.752010-12-22

Release history

Release3.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.50
Date2017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_52453.2NR_all_52453.13.0(10) 3OL7|1|J+3OL7|1|N+3OL7|1|K+3OL7|1|O+ 3OL7|1|L+3OL7|1|P, 3OL6|1|J+3OL6|1|N+3OL6|1|K+3OL6|1|O+ 3OL6|1|L+3OL6|1|P, 3OL6|1|B+3OL6|1|F+3OL6|1|C+3OL6|1|G+ 3OL6|1|D+3OL6|1|H, 3OLB|1|J+3OLB|1|N+3OLB|1|K+3OLB|1|O+ 3OLB|1|L+3OLB|1|P, 3OL9|1|J+3OL9|1|N+3OL9|1|K+3OL9|1|O+ 3OL9|1|L+3OL9|1|P, 3OL8|1|J+3OL8|1|N+3OL8|1|K+3OL8|1|O+ 3OL8|1|L+3OL8|1|P, 3OL8|1|B+3OL8|1|F+3OL8|1|C+3OL8|1|G+ 3OL8|1|D+3OL8|1|H, 3OL7|1|B+3OL7|1|F+3OL7|1|C+3OL7|1|G+ 3OL7|1|D+3OL7|1|H, 3OLB|1|B+3OLB|1|F+3OLB|1|C+3OLB|1|G+ 3OLB|1|D+3OLB|1|H, 3OL9|1|B+3OL9|1|F+3OL9|1|C+3OL9|1|G+ 3OL9|1|D+3OL9|1|H(0) (3) 3OLA|1|F+3OLA|1|H, 3OLA|1|J+3OLA|1|N+3OLA|1|K+3OLA|1|O+ 3OLA|1|L+3OLA|1|P, 3OLA|1|B+3OLA|1|D

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_52453.2NR_all_52453.33.51(10) 3OL6|1|B+3OL6|1|F+3OL6|1|C+3OL6|1|G+ 3OL6|1|D+3OL6|1|H, 3OL9|1|B+3OL9|1|F+3OL9|1|C+3OL9|1|G+ 3OL9|1|D+3OL9|1|H, 3OL8|1|J+3OL8|1|N+3OL8|1|K+3OL8|1|O+ 3OL8|1|L+3OL8|1|P, 3OL8|1|B+3OL8|1|F+3OL8|1|C+3OL8|1|G+ 3OL8|1|D+3OL8|1|H, 3OLB|1|J+3OLB|1|N+3OLB|1|K+3OLB|1|O+ 3OLB|1|L+3OLB|1|P, 3OL7|1|J+3OL7|1|N+3OL7|1|K+3OL7|1|O+ 3OL7|1|L+3OL7|1|P, 3OLB|1|B+3OLB|1|F+3OLB|1|C+3OLB|1|G+ 3OLB|1|D+3OLB|1|H, 3OL7|1|B+3OL7|1|F+3OL7|1|C+3OL7|1|G+ 3OL7|1|D+3OL7|1|H, 3OL9|1|J+3OL9|1|N+3OL9|1|K+3OL9|1|O+ 3OL9|1|L+3OL9|1|P, 3OL6|1|J+3OL6|1|N+3OL6|1|K+3OL6|1|O+ 3OL6|1|L+3OL6|1|P(0) (3) 3OLA|1|J+3OLA|1|N+3OLA|1|K+3OLA|1|O+ 3OLA|1|L+3OLA|1|P, 3OLA|1|B+3OLA|1|D, 3OLA|1|F+3OLA|1|H

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13OLB|1|J+3OLB|1|N+3OLB|1|K+3OLB|1|O+3OLB|1|L+3OLB|1|PPoliovirus polymerase elongation complex with 2',3'-dideoxy-ctpX-RAY DIFFRACTION2.4119
23OL6|1|B+3OL6|1|F+3OL6|1|C+3OL6|1|G+3OL6|1|D+3OL6|1|HPoliovirus polymerase elongation complexX-RAY DIFFRACTION2.518
33OL9|1|J+3OL9|1|N+3OL9|1|K+3OL9|1|O+3OL9|1|L+3OL9|1|PPoliovirus polymerase elongation complex with 3'-deoxy-CTPX-RAY DIFFRACTION2.2519
43OL9|1|B+3OL9|1|F+3OL9|1|C+3OL9|1|G+3OL9|1|D+3OL9|1|HPoliovirus polymerase elongation complex with 3'-deoxy-CTPX-RAY DIFFRACTION2.2518
53OL6|1|J+3OL6|1|N+3OL6|1|K+3OL6|1|O+3OL6|1|L+3OL6|1|PPoliovirus polymerase elongation complexX-RAY DIFFRACTION2.519
63OLB|1|B+3OLB|1|F+3OLB|1|C+3OLB|1|G+3OLB|1|D+3OLB|1|HPoliovirus polymerase elongation complex with 2',3'-dideoxy-ctpX-RAY DIFFRACTION2.4118
73OL7|1|J+3OL7|1|N+3OL7|1|K+3OL7|1|O+3OL7|1|L+3OL7|1|PPoliovirus polymerase elongation complex with CTPX-RAY DIFFRACTION2.716
83OL8|1|J+3OL8|1|N+3OL8|1|K+3OL8|1|O+3OL8|1|L+3OL8|1|PPoliovirus polymerase elongation complex with CTP-MnX-RAY DIFFRACTION2.7517
93OL8|1|B+3OL8|1|F+3OL8|1|C+3OL8|1|G+3OL8|1|D+3OL8|1|HPoliovirus polymerase elongation complex with CTP-MnX-RAY DIFFRACTION2.7517
103OL7|1|B+3OL7|1|F+3OL7|1|C+3OL7|1|G+3OL7|1|D+3OL7|1|HPoliovirus polymerase elongation complex with CTPX-RAY DIFFRACTION2.718
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