Motif HL_01766.1 Version HL_01766.1 of this group appears in releases 1.16 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 5-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX6_021 | 1VX6 | 0.0000 | 2 | A | 28S ribosomal RNA | A | 995 | C | 996 | G | 997 | G | 999 | C | 1000 | A | 1001 | A | 1003 | U | 1004 | cWW | tSW | ncWS | |
| 2 | HL_3U5H_020 | 3U5H | 0.1137 | 2 | 5 | 25S rRNA | A | 876 | C | 877 | G | 878 | G | 880 | C | 881 | A | 882 | A | 884 | U | 885 | cWW | tSW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGUGCAAAU | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUGCAAA | 2 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_01766.1 | Only in the parent motif |
|---|---|---|---|
| HL_50059.1 Compare | HL_3U5H_020 | HL_1VX6_021 |
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-tSW-cSS-R
- Heat map statistics
- Min 0.11 | Avg 0.06 | Max 0.11
Coloring options: