Motif HL_34108.4 Version HL_34108.4 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_022 | 3U5H | 0.6858 | 2 | 5 | 25S rRNA | C | 958 | U | 960 | C | 961 | G | 963 | cWW | |
| 2 | HL_4CUV_022 | 4CUV | 0.5347 | 2 | 1 | 25S RRNA | C | 958 | U | 960 | C | 961 | G | 963 | cWW | |
| 3 | HL_4A1B_023 | 4A1B | 0.0000 | 2 | 1 | 26S RRNA | U | 983 | U | 985 | C | 986 | G | 988 | cWW | |
| 4 | HL_4NVV_024 | 4NVV | 0.5409 | 2 | A | 23S Ribosomal RNA | U | 873 | U | 875 | A | 876 | G | 878 | cWW | |
| 5 | HL_1VW3_017 | 1VW3 | 0.7107 | 2 | A | 21S ribosomal RNA | U | 717 | U | 719 | A | 720 | G | 722 | cWW | |
| 6 | HL_4IOA_024 | 4IOA | 0.7742 | 2 | X | LSU rRNA | U | 839 | G | 841 | A | 842 | G | 844 | cWW | |
| 7 | HL_1S72_026 | 1S72 | 0.8138 | 2 | 0 | LSU rRNA | U | 919 | G | 921 | A | 922 | G | 924 | cWW | |
| 8 | HL_2QBG_026 | 2QBG | 0.8680 | 2 | B | 23S rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUCAG | 2 |
| UUUAGG | 2 |
| UCUCAG | 1 |
| UGUAAG | 1 |
| UUGAGG | 1 |
| UCGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCA | 3 |
| UUAG | 2 |
| GUAA | 1 |
| UGAG | 1 |
| CGAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_34108.4 | Only in the parent motif |
|---|---|---|---|
| HL_34108.3 Compare | HL_3U5H_022, HL_4NVV_024, HL_2QBG_026, HL_4A1B_023, HL_1S72_026, HL_4IOA_024, HL_1VW3_017 | HL_4CUV_022 |
Children motifs
| Child motif | Common motif instances | Only in HL_34108.4 | Only in the child motif |
|---|---|---|---|
| HL_34108.5 Compare | HL_3U5H_022, HL_4NVV_024, HL_2QBG_026, HL_4A1B_023, HL_4IOA_024, HL_1VW3_017, HL_4CUV_022, HL_1S72_026 | HL_1VWW_022, HL_1VX6_023 |
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