Motif HL_35652.1 Version HL_35652.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 6-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_057 | 2QBG | 0.0000 | 0 | B | 23S rRNA | G | 2303 | G | 2304 | U | 2305 | C | 2306 | G | 2307 | G | 2308 | A | 2309 | C | 2310 | A | 2311 | U | 2312 | C | 2313 | cWW | ncWS | ncHH | |
| 2 | HL_4QCN_053 | 4QCN | 0.3306 | 0 | A | 23S Ribosomal RNA | G | 2315 | G | 2316 | A | 2317 | C | 2318 | G | 2319 | G | 2320 | A | 2321 | A | 2322 | A | 2323 | U | 2324 | C | 2325 | cWW | ncWS | ncHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUCGGACAUC | 1 |
| GGACGGAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCGGACAU | 1 |
| GACGGAAAU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_35652.1 | Only in the parent motif |
|---|---|---|---|
| HL_38964.1 Compare | HL_2QBG_057 | HL_4QCN_053 | HL_4NVV_053 |
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-cHH-R-R-R-R-R
- Heat map statistics
- Min 0.33 | Avg 0.17 | Max 0.33
Coloring options: