Motif IL_43443.1 Version IL_43443.1 of this group appears in releases 3.27 to 3.32
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NDB_001 | 3NDB | 0.0000 | 0 | Self complementary | M | SRP RNA | C | 125 | U | 126 | C | 127 | G | 128 | * | C | 253 | G | 254 | G | 255 | G | 256 | cWW | ncWW | ncSW | cWW |
| 2 | IL_5J7L_353 | 5J7L | 0.9244 | 1 | Multiple bulged bases with non-canonical cWW | DA | LSU rRNA | C | 2870 | U | 2871 | A | 2872 | C | 2874 | * | G | 2843 | G | 2844 | U | 2845 | G | 2846 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCG*CGGG | 1 |
| CUAAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*GG | 1 |
| UAA*GU | 1 |
- Annotations
-
- Self complementary (1)
- Multiple bulged bases with non-canonical cWW (1)
- Basepair signature
- cWW-cWW-cSW-cWW
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
Coloring options: