Motif J3_01052.1 Version J3_01052.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 5-11 | 7-8 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4OJI_001 | 4OJI | 0.0000 | 0 | A | RNA (52-MER) | G | 35 | A | 36 | U | 37 | A | 38 | A | 39 | A | 40 | A | 41 | * | U | 12 | G | 13 | C | 14 | C | 15 | * | G | 19 | C | 20 | cWW | cWW | cWW | ||
| 2 | J3_4QJD_002 | 4QJD | 0.3588 | 0 | D+C | Twister RNA sequence | G | 55 | A | 56 | A | 57 | A | 58 | A | 59 | A | 60 | G | 61 | * | C | 11 | G | 12 | C | 13 | C | 14 | * | G | 39 | C | 40 | cWW | ncsS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCC*GC*GAUAAAA | 1 |
| CGCC*GC*GAAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC**AUAAA | 1 |
| GC**AAAAA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWW
- Heat map statistics
- Min 0.36 | Avg 0.18 | Max 0.36
Coloring options: