#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12C9L|1|A+ 2C9L|1|B (rep)5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*CP *TP*CP*AP*TP*GP*AP*AP*GP*T)-3', 5'-D(*AP*CP*TP*TP*CP*AP*CP*TP*GP*AP *GP*TP*CP*AP*GP*TP*GP*CP*T)-3'human gammaherpesvirus 4Structure of the Epstein-Barr virus ZEBRA proteinX-ray diffraction2.252006-02-21
22ASD|1|E+ 2ASD|1|D5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'oxoG-modified Insertion Ternary ComplexX-ray diffraction1.952006-01-10
32ASD|1|J+ 2ASD|1|H5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'oxoG-modified Insertion Ternary ComplexX-ray diffraction1.952006-01-10
43KMD|1|E+ 3KMD|1|F5'-D(*GP*GP*GP*CP*AP*TP*GP*CP*CP*TP*AP*GP*GP*CP*AP*TP*GP*CP*C)-3'Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramerX-ray diffraction2.152010-02-23
52ASJ|1|E+ 2ASJ|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'oxoG-modified Preinsertion Binary ComplexX-ray diffraction2.352006-01-10
62ASJ|1|J+ 2ASJ|1|H5'-D(*CP*TP*AP*AP*CP*(8OG)*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'oxoG-modified Preinsertion Binary ComplexX-ray diffraction2.352006-01-10
73K9F|1|F+ 3K9F|1|H+ 3K9F|1|E+ 3K9F|1|GDNA (5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3'), DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3'), DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3')Detailed structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerasesX-ray diffraction2.92009-10-27
83LTN|1|F+ 3LTN|1|H+ 3LTN|1|E+ 3LTN|1|G5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3', 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3', 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3', 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3'Inhibitor-stabilized topoisomerase IV-DNA cleavage complex (S. pneumoniae)X-ray diffraction3.12010-05-05
93KSA|1|F+ 3KSA|1|H+ 3KSA|1|E+ 3KSA|1|G5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3', 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3', 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3', 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3'Detailed structural insight into the DNA cleavage complex of type IIA topoisomerases (cleaved form)X-ray diffraction3.32010-05-05
101CRX|1|D+ 1CRX|1|EDNA (5'-D(*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(P*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*GP*C)-3')CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE IX-ray diffraction2.41998-10-14
112R8G|1|T+ 2R8G|1|P5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DT)-3', 5'-D(*DTP*DCP*DAP*DCP*(P)P*DGP*DAP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3'Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-ray diffraction2.72008-07-22
122H7H|1|X+ 2H7H|1|Y5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3', 5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3'Crystal structure of the JUN BZIP homodimer complexed with AP-1 DNAX-ray diffraction2.32007-06-12
133GII|1|E+ 3GII|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformationX-ray diffraction2.62009-05-19
142ASL|1|E+ 2ASL|1|D5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'oxoG-modified Postinsertion Binary ComplexX-ray diffraction2.652006-01-10
152ASL|1|J+ 2ASL|1|H5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'oxoG-modified Postinsertion Binary ComplexX-ray diffraction2.652006-01-10
161IGN|1|C+ 1IGN|1|DDNA (5'-D(*CP*CP*GP*CP*AP*CP*AP*CP*CP*CP*AP*CP*AP*CP*AP*CP*C P*AP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G P*CP*G)-3')DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITEX-ray diffraction2.251997-01-27
171IGN|1|E+ 1IGN|1|FDNA (5'-D(*CP*CP*GP*CP*AP*CP*AP*CP*CP*CP*AP*CP*AP*CP*AP*CP*C P*AP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G P*CP*G)-3')DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITEX-ray diffraction2.251997-01-27
182ATL|1|E+ 2ATL|1|D5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'Unmodified Insertion Ternary ComplexX-ray diffraction2.82006-01-10
192ATL|1|J+ 2ATL|1|H5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'Unmodified Insertion Ternary ComplexX-ray diffraction2.82006-01-10
203PT6|1|C+ 3PT6|1|IDNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3')Crystal structure of mouse DNMT1(650-1602) in complex with DNAX-ray diffraction32010-12-29
213PT6|1|D+ 3PT6|1|JDNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3')Crystal structure of mouse DNMT1(650-1602) in complex with DNAX-ray diffraction32010-12-29
223PTA|1|B+ 3PTA|1|CDNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3')Crystal structure of human DNMT1(646-1600) in complex with DNAX-ray diffraction3.62010-12-29
233KHG|1|E+ 3KHG|1|D5'-D(*C*CP*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.962010-02-16
243KHG|1|J+ 3KHG|1|H5'-D(*C*CP*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.962010-02-16
252RGR|1|D+ 2RGR|1|CDNATopoisomerase IIA bound to G-segment DNAX-ray diffraction32007-12-25
262AU0|1|E+ 2AU0|1|D5'-D(*CP*TP*AP*AP*CP*G*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'Unmodified preinsertion binary complexX-ray diffraction2.72006-01-10
272AU0|1|J+ 2AU0|1|H5'-D(*CP*TP*AP*AP*CP*G*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'Unmodified preinsertion binary complexX-ray diffraction2.72006-01-10
281H9T|1|X+ 1H9T|1|Y5'-D(*CP*AP*TP*CP*TP*GP*GP*TP*AP*CP*GP*AP* CP*CP*AP*GP*AP*TP*C)-3', 5'-D(*GP*AP*TP*CP*TP*GP*GP*TP*CP*GP*TP*AP* CP*CP*AP*GP*AP*TP*G)-3'FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATORX-ray diffraction3.252001-04-04
291ZR2|1|J+ 1ZR2|1|KTCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAsX-ray diffraction3.92005-08-30
301ZR2|1|X+ 1ZR2|1|YTCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAsX-ray diffraction3.92005-08-30
313FOF|1|F+ 3FOF|1|H+ 3FOF|1|E+ 3FOF|1|GDNA (5'-D(P*AP*CP*CP*AP*AP*GP*GP*TP*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3'), DNA (5'-D(P*CP*TP*GP*TP*TP*TP*TP*AP*CP*GP*TP*GP*CP*AP*T)-3'), DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3')Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerasesX-ray diffraction42009-02-24
322HMI|1|E+ 2HMI|1|FDNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3')HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEXX-ray diffraction2.81998-10-14
331J5O|1|T+ 1J5O|1|P5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3'CRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMERX-ray diffraction3.52002-06-14
341NGM|1|C+ 1NGM|1|D5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3'Crystal structure of a yeast Brf1-TBP-DNA ternary complexX-ray diffraction2.952003-03-25
351NGM|1|G+ 1NGM|1|H5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3'Crystal structure of a yeast Brf1-TBP-DNA ternary complexX-ray diffraction2.952003-03-25
361NGM|1|K+ 1NGM|1|L5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3'Crystal structure of a yeast Brf1-TBP-DNA ternary complexX-ray diffraction2.952003-03-25
371NGM|1|O+ 1NGM|1|P5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3'Crystal structure of a yeast Brf1-TBP-DNA ternary complexX-ray diffraction2.952003-03-25
381NKP|1|F+ 1NKP|1|G5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Myc-Max recognizing DNAX-ray diffraction1.82003-02-04
391LAT|1|C+ 1LAT|1|DDNA (5'-D(*TP*TP*CP*CP*AP*GP*AP*AP*CP*AP*TP*GP*TP*TP*CP*TP*G P*GP*A)-3')GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEXX-ray diffraction1.91996-04-03
401TRO|1|I+ 1TRO|1|JDNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3')CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTIONX-ray diffraction1.91994-01-31
411TRO|1|K+ 1TRO|1|LDNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3')CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTIONX-ray diffraction1.91994-01-31
421MJO|1|F+ 1MJO|1|GCONSENSUS DNA OPERATOR DUPLEX WITH THE CENTRAL TA STEP MUTATED TO ATMETHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO ATX-ray diffraction2.11999-08-02
432DGC|1|BDNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3')GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNAX-ray diffraction2.21996-03-08
441MJQ|1|E+ 1MJQ|1|FMUTATED MET CONSENSUS OPERATOR DUPLEXMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCEX-ray diffraction2.41999-08-02
451MJ2|1|F+ 1MJ2|1|GDNA (5'-D(*TP*TP*AP*GP*AP*CP*GP*TP*CP*TP*AP*GP*AP*CP*GP*TP*CP*TP*A)-3')METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCEX-ray diffraction2.41999-08-02
461MJQ|1|K+ 1MJQ|1|LMUTATED MET CONSENSUS OPERATOR DUPLEXMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCEX-ray diffraction2.41999-08-02
471R4O|1|C+ 1R4O|1|D5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*CP*TP*G)-3'Crystallographic analysis of the interaction of the glucocorticoid receptor with DNAX-ray diffraction2.52003-10-21
481B01|1|E+ 1B01|1|FDNA (5'-D(*CP*CP*CP*GP*TP*GP*CP*AP*CP*TP*CP*AP*AP*TP*GP*CP*AP*AP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*GP*CP*AP*TP*TP*GP*AP*GP*TP*GP*CP*AP*CP*GP*G)-3')TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEXX-ray diffraction2.561999-11-19
491D66|1|D+ 1D66|1|EDNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*AP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*TP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3')DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEXX-ray diffraction2.71992-03-06
502DRP|1|B+ 2DRP|1|CDNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*GP*GP*AP*TP*AP*AP*CP*GP*TP*C P*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*GP*TP*TP*AP*TP*CP*CP*TP*TP*AP*T P*TP*A)-3')THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITIONX-ray diffraction2.81994-08-31
512DRP|1|E+ 2DRP|1|FDNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*GP*GP*AP*TP*AP*AP*CP*GP*TP*C P*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*GP*TP*TP*AP*TP*CP*CP*TP*TP*AP*T P*TP*A)-3')THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITIONX-ray diffraction2.81994-08-31
521GLU|1|C+ 1GLU|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*C P*TP*G)-3')CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNAX-ray diffraction2.91994-01-31
531DGC|1|BDNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3')THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITYX-ray diffraction31994-06-22
541R4R|1|C+ 1R4R|1|D5'-D(*CP*TP*GP*AP*GP*AP*AP*CP*AP*TP*CP*AP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*CP*A)-3'Crystallographic analysis of the interaction of the glucocorticoid receptor with DNAX-ray diffraction32003-10-28
551SRS|1|C+ 1SRS|1|WDNA (5'-D(*CP*CP*(5IU)P*TP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*CP*CP*AP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*TP*GP*GP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*A P*AP*G)-3')SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNAX-ray diffraction3.21995-07-28
561ZR4|1|J+ 1ZR4|1|KTCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-ray diffraction3.42005-08-30
571ZR4|1|M+ 1ZR4|1|NTCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-ray diffraction3.42005-08-30
581ZR4|1|U+ 1ZR4|1|VTCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-ray diffraction3.42005-08-30
591ZR4|1|X+ 1ZR4|1|YTCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-ray diffraction3.42005-08-30

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLengthNAKB NA annotationNAKB protein annotation
11H9T|1|X+ 1H9T|1|YFADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATORX-RAY DIFFRACTION3.2519double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
22DRP|1|B+ 2DRP|1|CTHE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITIONX-RAY DIFFRACTION2.819B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
32DRP|1|E+ 2DRP|1|FTHE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITIONX-RAY DIFFRACTION2.819B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
42C9L|1|A+ 2C9L|1|BStructure of the Epstein-Barr virus ZEBRA proteinX-RAY DIFFRACTION2.2519B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
52DGC|1|BGCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNAX-RAY DIFFRACTION2.219B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
61DGC|1|BTHE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITYX-RAY DIFFRACTION319B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
71CRX|1|D+ 1CRX|1|ECRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE IX-RAY DIFFRACTION2.419enzyme,recombinase
81IGN|1|C+ 1IGN|1|DDNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITEX-RAY DIFFRACTION2.2519DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
91IGN|1|E+ 1IGN|1|FDNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITEX-RAY DIFFRACTION2.2519DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
101NKP|1|F+ 1NKP|1|GCrystal structure of Myc-Max recognizing DNAX-RAY DIFFRACTION1.819B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
111R4O|1|C+ 1R4O|1|DCrystallographic analysis of the interaction of the glucocorticoid receptor with DNAX-RAY DIFFRACTION2.519B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
121R4R|1|C+ 1R4R|1|DCrystallographic analysis of the interaction of the glucocorticoid receptor with DNAX-RAY DIFFRACTION319double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
131LAT|1|C+ 1LAT|1|DGLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEXX-RAY DIFFRACTION1.919B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
141B01|1|E+ 1B01|1|FTRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEXX-RAY DIFFRACTION2.5619DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
151GLU|1|C+ 1GLU|1|DCRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNAX-RAY DIFFRACTION2.919B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
163PTA|1|B+ 3PTA|1|CCrystal structure of human DNMT1(646-1600) in complex with DNAX-RAY DIFFRACTION3.619B-form double helix,double helix,structureenzyme,methylase,transferase
171ZR2|1|J+ 1ZR2|1|KStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAsX-RAY DIFFRACTION3.919enzyme,recombinase
181ZR2|1|X+ 1ZR2|1|YStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAsX-RAY DIFFRACTION3.919enzyme,recombinase
191ZR4|1|J+ 1ZR4|1|KStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-RAY DIFFRACTION3.419enzyme,recombinase
201ZR4|1|M+ 1ZR4|1|NStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-RAY DIFFRACTION3.419enzyme,recombinase
211ZR4|1|X+ 1ZR4|1|YStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-RAY DIFFRACTION3.419enzyme,recombinase
221ZR4|1|U+ 1ZR4|1|VStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-RAY DIFFRACTION3.419enzyme,recombinase
233KMD|1|E+ 3KMD|1|FCrystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramerX-RAY DIFFRACTION2.1519B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
243PT6|1|D+ 3PT6|1|JCrystal structure of mouse DNMT1(650-1602) in complex with DNAX-RAY DIFFRACTION319B-form double helix,double helix,structureenzyme,methylase,transferase
253PT6|1|C+ 3PT6|1|ICrystal structure of mouse DNMT1(650-1602) in complex with DNAX-RAY DIFFRACTION319B-form double helix,double helix,structureenzyme,methylase,transferase
261D66|1|D+ 1D66|1|EDNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEXX-RAY DIFFRACTION2.719double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
272H7H|1|X+ 2H7H|1|YCrystal structure of the JUN BZIP homodimer complexed with AP-1 DNAX-RAY DIFFRACTION2.319B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
281MJ2|1|F+ 1MJ2|1|GMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCEX-RAY DIFFRACTION2.419DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
291MJO|1|F+ 1MJO|1|GMETHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO ATX-RAY DIFFRACTION2.119DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
301MJQ|1|E+ 1MJQ|1|FMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCEX-RAY DIFFRACTION2.419DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
311MJQ|1|K+ 1MJQ|1|LMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCEX-RAY DIFFRACTION2.419DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
321TRO|1|K+ 1TRO|1|LCRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTIONX-RAY DIFFRACTION1.919B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor
331TRO|1|I+ 1TRO|1|JCRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTIONX-RAY DIFFRACTION1.919B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor
343LTN|1|F+ 3LTN|1|H+ 3LTN|1|E+ 3LTN|1|GInhibitor-stabilized topoisomerase IV-DNA cleavage complex (S. pneumoniae)X-RAY DIFFRACTION3.119double helix,structureenzyme,isomerase
353K9F|1|F+ 3K9F|1|H+ 3K9F|1|E+ 3K9F|1|GDetailed structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerasesX-RAY DIFFRACTION2.919double helix,structureenzyme,isomerase
363FOF|1|F+ 3FOF|1|H+ 3FOF|1|E+ 3FOF|1|GStructural insight into the quinolone-DNA cleavage complex of type IIA topoisomerasesX-RAY DIFFRACTION419B-form double helix,double helix,structureenzyme,isomerase
372RGR|1|D+ 2RGR|1|CTopoisomerase IIA bound to G-segment DNAX-RAY DIFFRACTION319B-form double helix,double helix,structureenzyme,isomerase
383KSA|1|F+ 3KSA|1|H+ 3KSA|1|E+ 3KSA|1|GDetailed structural insight into the DNA cleavage complex of type IIA topoisomerases (cleaved form)X-RAY DIFFRACTION3.319double helix,structureenzyme,isomerase
391SRS|1|C+ 1SRS|1|WSERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNAX-RAY DIFFRACTION3.219B-form double helix,double helix,structureDNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription
402HMI|1|E+ 2HMI|1|FHIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEXX-RAY DIFFRACTION2.819double helix,structureantibody,enzyme,immune system,polymerase,regulatory,transferase
411J5O|1|T+ 1J5O|1|PCRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMERX-RAY DIFFRACTION3.519double helix,structureantibody,enzyme,immune system,polymerase,regulatory,transferase
422R8G|1|T+ 2R8G|1|PSelectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-RAY DIFFRACTION2.719B-form double helix,double helix,structureenzyme,polymerase,transferase
431NGM|1|C+ 1NGM|1|DCrystal structure of a yeast Brf1-TBP-DNA ternary complexX-RAY DIFFRACTION2.9519double helix,structureβ-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription
441NGM|1|G+ 1NGM|1|HCrystal structure of a yeast Brf1-TBP-DNA ternary complexX-RAY DIFFRACTION2.9519double helix,structureβ-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription
451NGM|1|O+ 1NGM|1|PCrystal structure of a yeast Brf1-TBP-DNA ternary complexX-RAY DIFFRACTION2.9519double helix,structureβ-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription
461NGM|1|K+ 1NGM|1|LCrystal structure of a yeast Brf1-TBP-DNA ternary complexX-RAY DIFFRACTION2.9519double helix,structureβ-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription
472AU0|1|J+ 2AU0|1|HUnmodified preinsertion binary complexX-RAY DIFFRACTION2.719double helix,structureenzyme,polymerase,transferase
482ASJ|1|E+ 2ASJ|1|DoxoG-modified Preinsertion Binary ComplexX-RAY DIFFRACTION2.3519double helix,structureenzyme,polymerase,transferase
492AU0|1|E+ 2AU0|1|DUnmodified preinsertion binary complexX-RAY DIFFRACTION2.719double helix,structureenzyme,polymerase,transferase
502ATL|1|E+ 2ATL|1|DUnmodified Insertion Ternary ComplexX-RAY DIFFRACTION2.819B-form double helix,double helix,structureenzyme,polymerase,transferase
512ASJ|1|J+ 2ASJ|1|HoxoG-modified Preinsertion Binary ComplexX-RAY DIFFRACTION2.3519double helix,structureenzyme,polymerase,transferase
522ASD|1|J+ 2ASD|1|HoxoG-modified Insertion Ternary ComplexX-RAY DIFFRACTION1.9519B-form double helix,double helix,structureenzyme,polymerase,transferase
532ASD|1|E+ 2ASD|1|DoxoG-modified Insertion Ternary ComplexX-RAY DIFFRACTION1.9519B-form double helix,double helix,structureenzyme,polymerase,transferase
542ASL|1|J+ 2ASL|1|HoxoG-modified Postinsertion Binary ComplexX-RAY DIFFRACTION2.6519B-form double helix,double helix,structureenzyme,polymerase,transferase
552ASL|1|E+ 2ASL|1|DoxoG-modified Postinsertion Binary ComplexX-RAY DIFFRACTION2.6519B-form double helix,double helix,structureenzyme,polymerase,transferase
563GII|1|E+ 3GII|1|DDpo4 extension ternary complex with disordered A opposite an oxoG in anti conformationX-RAY DIFFRACTION2.619enzyme,polymerase,transferase
573KHG|1|E+ 3KHG|1|DDpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.9619double helix,structureenzyme,polymerase,transferase
583KHG|1|J+ 3KHG|1|HDpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.9619double helix,structureenzyme,polymerase,transferase
592ATL|1|J+ 2ATL|1|HUnmodified Insertion Ternary ComplexX-RAY DIFFRACTION2.819B-form double helix,double helix,structureenzyme,polymerase,transferase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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