Equivalence class NR_2.5_24936.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8PFQ|1|A (rep) | Chains: A,B | synthetic construct | RNA structure with 1-methylpseudoridine, P1 space group | X-ray diffraction | 1.01 | 2024-01-31 | |||
| 2 | 6XUS|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | synthetic construct | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-ray diffraction | 1.1 | 2021-02-03 | |||
| 3 | 8PFQ|1|B | Chains: A,B | synthetic construct | RNA structure with 1-methylpseudoridine, P1 space group | X-ray diffraction | 1.01 | 2024-01-31 | |||
| 4 | 6XUR|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | chemical production metagenome | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-ray diffraction | 1.1 | 2020-02-19 | |||
| 5 | 2Q1R|1|A | RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3') | Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch. | X-ray diffraction | 1.12 | 2007-10-30 | ||||
| 6 | 8PFK|1|A | RNA (12-mer) | synthetic construct | RNA structure with 1-methylpseudoridine, C2 space group | X-ray diffraction | 1.321 | 2024-01-31 | |||
| 7 | 7LO9|1|A+ 7LO9|1|B | Chains: A,B,C,D | synthetic construct | RNA dodecamer containing a GNA A residue | X-ray diffraction | 1.78 | 2021-12-22 | |||
| 8 | 7LO9|1|C+ 7LO9|1|D | Chains: A,B,C,D | synthetic construct | RNA dodecamer containing a GNA A residue | X-ray diffraction | 1.78 | 2021-12-22 | |||
| 9 | 157D|1|A+ 157D|1|B | RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS | X-ray diffraction | 1.8 | 1994-05-31 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8PFQ|1|B | RNA structure with 1-methylpseudoridine, P1 space group | X-RAY DIFFRACTION | 1.01 | 11 | |
| 2 | 8PFQ|1|A | RNA structure with 1-methylpseudoridine, P1 space group | X-RAY DIFFRACTION | 1.01 | 11 | |
| 3 | 157D|1|A+ 157D|1|B | CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS | X-RAY DIFFRACTION | 1.8 | 12 | |
| 4 | 6XUS|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-RAY DIFFRACTION | 1.1 | 12 | |
| 5 | 8PFK|1|A | RNA structure with 1-methylpseudoridine, C2 space group | X-RAY DIFFRACTION | 1.321 | 11 | |
| 6 | 2Q1R|1|A | Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch. | X-RAY DIFFRACTION | 1.12 | 12 | |
| 7 | 6XUR|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-RAY DIFFRACTION | 1.1 | 11 | |
| 8 | 7LO9|1|A+ 7LO9|1|B | RNA dodecamer containing a GNA A residue | X-RAY DIFFRACTION | 1.78 | 10 | |
| 9 | 7LO9|1|C+ 7LO9|1|D | RNA dodecamer containing a GNA A residue | X-RAY DIFFRACTION | 1.78 | 10 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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