Equivalence class NR_20.0_65789.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6N6F|1|D (rep) | RNA (5'-R(P*GP*C)-3') | synthetic construct | Vibrio cholerae Oligoribonuclease bound to pGC | X-ray diffraction | 1.74 | 2019-06-12 | |||
| 2 | 7MPN|1|B | 5'-phosphorylated GC | synthetic construct | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | |||
| 3 | 7MPN|1|N | 5'-phosphorylated GC | synthetic construct | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | |||
| 4 | 7MPN|1|J | 5'-phosphorylated GC | synthetic construct | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | |||
| 5 | 4OHY|1|B | RNA (5'-R(*GP*C)-3') | C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) | X-ray diffraction | 2 | 2014-05-14 | ||||
| 6 | 7MPN|1|P | 5'-phosphorylated GC | synthetic construct | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | |||
| 7 | 7MPN|1|H | 5'-phosphorylated GC | synthetic construct | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | |||
| 8 | 7MPN|1|L | 5'-phosphorylated GC | synthetic construct | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | |||
| 9 | 7MPN|1|D | 5'-phosphorylated GC | synthetic construct | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | |||
| 10 | 7MPN|1|F | 5'-phosphorylated GC | synthetic construct | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | |||
| 11 | 4OI1|1|B | RNA (5'-R(*GP*C)-3') | Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) | X-ray diffraction | 2.3 | 2014-05-14 | ||||
| 12 | 4OI0|1|B | RNA (5'-R(*GP*C)-3') | bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) | X-ray diffraction | 2.2 | 2014-05-14 | ||||
| 13 | 1N38|1|B | 5'-R(P*GP*C)-3' | reovirus polymerase lambda3 elongation complex with one phosphodiester bond formed | X-ray diffraction | 2.8 | 2002-12-25 |
Release history
| Release | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 1N38|1|B | reovirus polymerase lambda3 elongation complex with one phosphodiester bond formed | X-RAY DIFFRACTION | 2.8 | 2 | |
| 2 | 4OHY|1|B | C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) | X-RAY DIFFRACTION | 2 | 2 | |
| 3 | 4OI1|1|B | Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) | X-RAY DIFFRACTION | 2.3 | 2 | |
| 4 | 4OI0|1|B | bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) | X-RAY DIFFRACTION | 2.2 | 2 | |
| 5 | 6N6F|1|D | Vibrio cholerae Oligoribonuclease bound to pGC | X-RAY DIFFRACTION | 1.74 | 3 | |
| 6 | 7MPN|1|L | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 | |
| 7 | 7MPN|1|J | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 | |
| 8 | 7MPN|1|N | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 | |
| 9 | 7MPN|1|P | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 | |
| 10 | 7MPN|1|H | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 | |
| 11 | 7MPN|1|F | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 | |
| 12 | 7MPN|1|D | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 | |
| 13 | 7MPN|1|B | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: