Equivalence class NR_3.5_10266.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6TB3|1|n (rep) | Transfer RNA | mRNA, tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | Electron microscopy | 2.8 | 2020-04-22 |
| 2 | 8K82|1|C5 | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA | Electron microscopy | 3 | 2024-07-10 |
| 3 | 7B7D|1|Sm | Transfer RNA | mRNA, tRNA | Saccharomyces cerevisiae S288C | Eukarya | RF00005 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | Electron microscopy | 3.3 | 2021-03-10 |
| 4 | 7B7D|1|Sn | Transfer RNA | mRNA, tRNA | Saccharomyces cerevisiae S288C | Eukarya | RF00005 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | Electron microscopy | 3.3 | 2021-03-10 |
| 5 | 6TNU|1|n | Transfer RNA | mRNA, P-site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | Electron microscopy | 3.1 | 2020-04-22 |
| 6 | 6FYY|1|1 | Transfer RNA | mRNA (31-MER), tRNAi | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | Electron microscopy | 3.02 | 2018-12-05 |
| 7 | 8CAS|1|1 | Transfer RNA | mRNA, tRNA | Saccharomyces cerevisiae W303 | Eukarya | RF00005 | Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial) | Electron microscopy | 3.3 | 2023-05-24 |
| 8 | 8RW1|1|1 | Transfer RNA | Met-tRNAi | Saccharomyces cerevisiae S288C | Eukarya | RF00005 | Structure of a yeast 48S-AUC preinitiation complex in closed conformation | Electron microscopy | 3.35 | 2024-09-11 |
| 9 | 8S8D|1|1 | Transfer RNA | Met-tRNAi | Saccharomyces cerevisiae S288C | Eukarya | RF00005 | Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2) | Electron microscopy | 3.45 | 2024-09-11 |
| 10 | 6FYX|1|1 | Transfer RNA | mRNA (31-MER), tRNAi | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | Electron microscopy | 3.5 | 2018-12-05 |
| 11 | 1YFG|1|A | Transfer RNA | YEAST INITIATOR TRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | YEAST INITIATOR TRNA | X-ray diffraction | 3 | 1997-09-03 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8CAS|1|1 | Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial) | ELECTRON MICROSCOPY | 3.3 | 64 | |
| 2 | 6FYX|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | ELECTRON MICROSCOPY | 3.5 | 64 | |
| 3 | 6FYY|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | ELECTRON MICROSCOPY | 3.02 | 64 | |
| 4 | 8S8D|1|1 | Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2) | ELECTRON MICROSCOPY | 3.45 | 75 | |
| 5 | 8RW1|1|1 | Structure of a yeast 48S-AUC preinitiation complex in closed conformation | ELECTRON MICROSCOPY | 3.35 | 75 | |
| 6 | 1YFG|1|A | YEAST INITIATOR TRNA | X-RAY DIFFRACTION | 3 | 64 | |
| 7 | 8K82|1|C5 | Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA | ELECTRON MICROSCOPY | 3 | 66 | |
| 8 | 6TB3|1|n | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 66 | |
| 9 | 6TNU|1|n | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | ELECTRON MICROSCOPY | 3.1 | 68 | |
| 10 | 7B7D|1|Sn | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | ELECTRON MICROSCOPY | 3.3 | 75 | |
| 11 | 7B7D|1|Sm | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | ELECTRON MICROSCOPY | 3.3 | 75 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: