Equivalence class NR_3.5_12763.16 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7OF0|1|A (rep) | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | Electron microscopy | 2.2 | 2021-06-09 |
| 2 | 6ZM6|1|A | Large subunit ribosomal RNA | 16S mitochondrial rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | Electron microscopy | 2.59 | 2021-01-13 |
| 3 | 7O9M|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module | Electron microscopy | 2.5 | 2021-06-30 |
| 4 | 7OF6|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | Electron microscopy | 2.6 | 2021-06-09 |
| 5 | 7OF4|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | Electron microscopy | 2.7 | 2021-06-09 |
| 6 | 6ZM5|1|A | Large subunit ribosomal RNA | 16S mitochondrial rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | Electron microscopy | 2.89 | 2021-01-13 |
| 7 | 7OF7|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | Electron microscopy | 2.5 | 2021-06-23 |
| 8 | 6VMI|1|A | Large subunit ribosomal RNA | 16s rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | Electron microscopy | 2.96 | 2020-08-05 |
| 9 | 6VLZ|1|A | Large subunit ribosomal RNA | 16s rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | Electron microscopy | 2.97 | 2020-08-05 |
| 10 | 7OF2|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | Electron microscopy | 2.7 | 2021-06-02 |
| 11 | 7OF3|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | Electron microscopy | 2.7 | 2021-05-19 |
| 12 | 7L20|1|A | Large subunit ribosomal RNA | 16S rRNA mitochondrial | Homo sapiens | Mitochondria | RF02541 | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | Electron microscopy | 3.15 | 2021-05-12 |
| 13 | 7ODR|1|A | Large subunit ribosomal RNA | 16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNA | Homo sapiens | Mitochondria | RF02541 | State A of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 2.9 | 2021-06-23 |
| 14 | 7A5J|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | Electron microscopy | 3.1 | 2020-12-23 |
| 15 | 7OF5|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | Electron microscopy | 2.9 | 2021-06-09 |
| 16 | 7ODT|1|A | Large subunit ribosomal RNA | 16S mitochondrial rRNA | Homo sapiens | Mitochondria | RF02541 | State C of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 3.1 | 2021-06-23 |
| 17 | 7O9K|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu | Electron microscopy | 3.1 | 2021-06-30 |
| 18 | 5OOL|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.06 | 2017-09-13 |
| 19 | 7ODS|1|A | Large subunit ribosomal RNA | 16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA | Homo sapiens | Mitochondria | RF02541 | State B of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 3.1 | 2021-06-23 |
| 20 | 7A5H|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | Electron microscopy | 3.3 | 2020-12-23 |
| 21 | 7L08|1|A | Large subunit ribosomal RNA | 16S RRNA | Homo sapiens | Mitochondria | RF02541 | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | Electron microscopy | 3.49 | 2021-05-12 |
| 22 | 6ZSC|1|XA | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Human mitochondrial ribosome in complex with E-site tRNA | Electron microscopy | 3.5 | 2020-09-16 |
| 23 | 3J9M|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 2015-04-15 |
| 24 | 5OOM|1|A | Large subunit ribosomal RNA | 16S ribosomal RNA | Homo sapiens | Mitochondria | RF02541 | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.03 | 2017-09-13 |
| 25 | 3J7Y|1|A | Large subunit ribosomal RNA | 16S rRNA | Homo sapiens | Mitochondria | RF02541 | Structure of the large ribosomal subunit from human mitochondria | Electron microscopy | 3.4 | 2014-10-15 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_12763.16 | NR_3.5_12763.15 | 3.185 | (23) 3J7Y|1|A, 3J9M|1|A, 5OOL|1|A, 5OOM|1|A, 6VLZ|1|A, 6VMI|1|A, 6ZM5|1|A, 6ZM6|1|A, 6ZSC|1|XA, 7A5H|1|A, 7A5J|1|A, 7L08|1|A, 7L20|1|A, 7ODR|1|A, 7ODS|1|A, 7ODT|1|A, 7OF0|1|A, 7OF2|1|A, 7OF3|1|A, 7OF4|1|A, 7OF5|1|A, 7OF6|1|A, 7OF7|1|A | (2) 7O9K|1|A, 7O9M|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_12763.16 | NR_3.5_12763.17 | 3.196 | (25) 3J7Y|1|A, 3J9M|1|A, 5OOL|1|A, 5OOM|1|A, 6VLZ|1|A, 6VMI|1|A, 6ZM5|1|A, 6ZM6|1|A, 6ZSC|1|XA, 7A5H|1|A, 7A5J|1|A, 7L08|1|A, 7L20|1|A, 7O9K|1|A, 7O9M|1|A, 7ODR|1|A, 7ODS|1|A, 7ODT|1|A, 7OF0|1|A, 7OF2|1|A, 7OF3|1|A, 7OF4|1|A, 7OF5|1|A, 7OF6|1|A, 7OF7|1|A | (0) | (7) 7OI7|1|A, 7OI8|1|A, 7OI9|1|A, 7OIA|1|A, 7OIB|1|A, 7OIC|1|A, 7OIE|1|A |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6VMI|1|A | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 1527 | |
| 2 | 6VLZ|1|A | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 1527 | |
| 3 | 7L08|1|A | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | ELECTRON MICROSCOPY | 3.49 | 1527 | |
| 4 | 7L20|1|A | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | ELECTRON MICROSCOPY | 3.15 | 1527 | |
| 5 | 3J7Y|1|A | Structure of the large ribosomal subunit from human mitochondria | ELECTRON MICROSCOPY | 3.4 | 1473 | |
| 6 | 3J9M|1|A | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 1472 | |
| 7 | 5OOL|1|A | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.06 | 1441 | |
| 8 | 7A5J|1|A | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.1 | 1492 | |
| 9 | 7A5H|1|A | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | ELECTRON MICROSCOPY | 3.3 | 1457 | |
| 10 | 6ZSC|1|XA | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 1501 | |
| 11 | 6ZM6|1|A | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 1531 | |
| 12 | 6ZM5|1|A | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 1534 | |
| 13 | 7OF6|1|A | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | ELECTRON MICROSCOPY | 2.6 | 1460 | |
| 14 | 7OF4|1|A | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | ELECTRON MICROSCOPY | 2.7 | 1460 | |
| 15 | 7OF2|1|A | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | ELECTRON MICROSCOPY | 2.7 | 1407 | |
| 16 | 7OF5|1|A | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | ELECTRON MICROSCOPY | 2.9 | 1386 | |
| 17 | 7OF7|1|A | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | ELECTRON MICROSCOPY | 2.5 | 1373 | |
| 18 | 7ODT|1|A | State C of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 1451 | |
| 19 | 5OOM|1|A | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.03 | 1092 | |
| 20 | 7OF0|1|A | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | ELECTRON MICROSCOPY | 2.2 | 1376 | |
| 21 | 7OF3|1|A | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | ELECTRON MICROSCOPY | 2.7 | 1386 | |
| 22 | 7ODR|1|A | State A of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 2.9 | 1417 | |
| 23 | 7ODS|1|A | State B of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 1414 | |
| 24 | 7O9M|1|A | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module | ELECTRON MICROSCOPY | 2.5 | 1453 | |
| 25 | 7O9K|1|A | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu | ELECTRON MICROSCOPY | 3.1 | 1435 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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