Equivalence class NR_3.5_44285.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2DER|1|D (rep) | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-ray diffraction | 3.1 | 2006-08-15 | ||||
| 2 | 2DER|1|C | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-ray diffraction | 3.1 | 2006-08-15 | ||||
| 3 | 2DET|1|C | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state | X-ray diffraction | 3.4 | 2006-08-15 | ||||
| 4 | 2DEU|1|D | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-ray diffraction | 3.4 | 2006-08-15 | ||||
| 5 | 2DEU|1|C | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-ray diffraction | 3.4 | 2006-08-15 | ||||
| 6 | 8HSP|1|V | Transfer RNA | mRNA, P-site tRNA_Glu | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state | Electron microscopy | 2.32 | 2024-04-03 |
| 7 | 8YUP|1|V | Transfer RNA | P-site tRNAGlu | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA | Electron microscopy | 2.39 | 2024-11-06 |
| 8 | 8HTZ|1|V | Transfer RNA | mRNA, P-site tRNA_Glu | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state | Electron microscopy | 2.4 | 2024-04-03 |
| 9 | 8YUQ|1|V | Transfer RNA | P-site tRNAGlu | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA | Electron microscopy | 2.41 | 2024-11-06 |
| 10 | 8YUS|1|V | Transfer RNA | P-site tRNAGlu | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA | Electron microscopy | 2.43 | 2024-11-06 |
| 11 | 8YUR|1|V | Transfer RNA | P-site tRNAGlu | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA | Electron microscopy | 2.47 | 2024-11-06 |
| 12 | 8HU1|1|V | Transfer RNA | mRNA, P-site tRNA_Glu | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state | Electron microscopy | 2.69 | 2024-04-03 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8HTZ|1|V | E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state | ELECTRON MICROSCOPY | 2.4 | 71 | |
| 2 | 8HU1|1|V | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state | ELECTRON MICROSCOPY | 2.69 | 71 | |
| 3 | 8HSP|1|V | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state | ELECTRON MICROSCOPY | 2.32 | 71 | |
| 4 | 8YUS|1|V | E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA | ELECTRON MICROSCOPY | 2.43 | 76 | |
| 5 | 8YUQ|1|V | E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA | ELECTRON MICROSCOPY | 2.41 | 76 | |
| 6 | 8YUR|1|V | E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA | ELECTRON MICROSCOPY | 2.47 | 76 | |
| 7 | 8YUP|1|V | E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA | ELECTRON MICROSCOPY | 2.39 | 76 | |
| 8 | 2DER|1|D | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-RAY DIFFRACTION | 3.1 | 71 | |
| 9 | 2DET|1|C | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state | X-RAY DIFFRACTION | 3.4 | 70 | |
| 10 | 2DEU|1|C | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-RAY DIFFRACTION | 3.4 | 74 | |
| 11 | 2DEU|1|D | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-RAY DIFFRACTION | 3.4 | 74 | |
| 12 | 2DER|1|C | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-RAY DIFFRACTION | 3.1 | 74 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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