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Equivalence class NR_3.5_72291.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18FFI|1|C (rep)guide RNAsynthetic constructStructure of tetramerized MapSPARTA upon guide RNA-mediated target DNA bindingElectron microscopy2.7212023-08-23
28FFI|1|Gguide RNAsynthetic constructStructure of tetramerized MapSPARTA upon guide RNA-mediated target DNA bindingElectron microscopy2.7212023-08-23
38IFK|1|Cguide RNAEscherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of monomeric SPARTA gRNA-ssDNA target complexElectron microscopy2.54202024-01-17
48FFI|1|Oguide RNAsynthetic constructStructure of tetramerized MapSPARTA upon guide RNA-mediated target DNA bindingElectron microscopy2.7212023-08-23
58IFM|1|Pguide RNAEscherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2Electron microscopy2.92202024-01-17
68QLP|1|CRNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')Bacillales bacteriumCryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complexElectron microscopy3.14212024-01-31
78QLP|1|GRNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')Bacillales bacteriumCryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complexElectron microscopy3.14212024-01-31
88QLP|1|KRNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')Bacillales bacteriumCryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complexElectron microscopy3.14212024-01-31
98QLP|1|ORNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')Bacillales bacteriumCryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complexElectron microscopy3.14212024-01-31
108J7S|1|CRNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3')Maribacter polysiphoniaeStructure of the SPARTA complexElectron microscopy2.84192024-03-06
118J7S|1|GRNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3')Maribacter polysiphoniaeStructure of the SPARTA complexElectron microscopy2.84192024-03-06
128J7S|1|KRNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3')Maribacter polysiphoniaeStructure of the SPARTA complexElectron microscopy2.84192024-03-06
138J7S|1|ORNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3')Maribacter polysiphoniaeStructure of the SPARTA complexElectron microscopy2.84192024-03-06
148FFI|1|Jguide RNAsynthetic constructStructure of tetramerized MapSPARTA upon guide RNA-mediated target DNA bindingElectron microscopy2.7212023-08-23
158IFM|1|Cguide RNAEscherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2Electron microscopy2.92202024-01-17
168IFM|1|Hguide RNAEscherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2Electron microscopy2.92202024-01-17
178IFM|1|Lguide RNAEscherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2Electron microscopy2.92202024-01-17
188IFL|1|Cguide RNAEscherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1Electron microscopy3.11202024-01-17
198SPO|1|Gguide RNAMaribacter polysiphoniaeTetramerized activation of MapSPARTA bound with NAD+Electron microscopy2.98212023-08-23
208J9P|1|ERNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')Thermoflavifilum thermophilumSPARTA dimer bound with guide-targetElectron microscopy3.4212024-03-06
218J9P|1|GRNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')Thermoflavifilum thermophilumSPARTA dimer bound with guide-targetElectron microscopy3.4212024-03-06
228SQU|1|Cguide RNAMaribacter polysiphoniaeMonomeric MapSPARTA bound with guide RNA and target DNA hybridElectron microscopy3.28212023-08-23
238IFL|1|Hguide RNAEscherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1Electron microscopy3.11202024-01-17
248IFL|1|Lguide RNAEscherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1Electron microscopy3.11202024-01-17
258IFL|1|Pguide RNAEscherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1Electron microscopy3.11202024-01-17
268SPO|1|Cguide RNAMaribacter polysiphoniaeTetramerized activation of MapSPARTA bound with NAD+Electron microscopy2.98192023-08-23
278SPO|1|Jguide RNAMaribacter polysiphoniaeTetramerized activation of MapSPARTA bound with NAD+Electron microscopy2.98212023-08-23
288J8H|1|ERNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')Thermoflavifilum thermophilumSPARTA monomer bound with guide-target, state 2Electron microscopy3.4202024-03-06
298SP0|1|Gguide RNAsynthetic constructSymmetric dimer of MapSPARTA bound with gRNA/tDNA hybridElectron microscopy3.33212023-08-23
308SP0|1|Cguide RNAsynthetic constructSymmetric dimer of MapSPARTA bound with gRNA/tDNA hybridElectron microscopy3.33212023-08-23
318SPO|1|Oguide RNAMaribacter polysiphoniaeTetramerized activation of MapSPARTA bound with NAD+Electron microscopy2.98192023-08-23
328J9G|1|ERNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')Thermoflavifilum thermophilumCrtSPARTA hetero-dimer bound with guide-target, state 1Electron microscopy3.5122024-03-06
338K34|1|CRNA (5'-R(P*AP*AP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')Escherichia coli 'BL21-Gold(DE3)pLysS AGCryo-EM structure of SPARTA gRNA binary complexElectron microscopy2.8142024-01-17

Release history

Release3.3253.326
Date2024-03-062024-03-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18K34|1|CCryo-EM structure of SPARTA gRNA binary complexELECTRON MICROSCOPY2.814
28IFL|1|PCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1ELECTRON MICROSCOPY3.1120
38IFL|1|LCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1ELECTRON MICROSCOPY3.1120
48IFL|1|HCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1ELECTRON MICROSCOPY3.1120
58IFM|1|HCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2ELECTRON MICROSCOPY2.9220
68IFM|1|PCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2ELECTRON MICROSCOPY2.9220
78IFM|1|LCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2ELECTRON MICROSCOPY2.9220
88IFM|1|CCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2ELECTRON MICROSCOPY2.9220
98IFL|1|CCryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1ELECTRON MICROSCOPY3.1120
108IFK|1|CCryo-EM structure of monomeric SPARTA gRNA-ssDNA target complexELECTRON MICROSCOPY2.5420
118QLP|1|CCryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complexELECTRON MICROSCOPY3.1421
128QLP|1|KCryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complexELECTRON MICROSCOPY3.1421
138QLP|1|GCryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complexELECTRON MICROSCOPY3.1421
148QLP|1|OCryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complexELECTRON MICROSCOPY3.1421
158J9G|1|ECrtSPARTA hetero-dimer bound with guide-target, state 1ELECTRON MICROSCOPY3.512
168J8H|1|ESPARTA monomer bound with guide-target, state 2ELECTRON MICROSCOPY3.420
178SQU|1|CMonomeric MapSPARTA bound with guide RNA and target DNA hybridELECTRON MICROSCOPY3.2821
188SPO|1|JTetramerized activation of MapSPARTA bound with NAD+ELECTRON MICROSCOPY2.9821
198SP0|1|CSymmetric dimer of MapSPARTA bound with gRNA/tDNA hybridELECTRON MICROSCOPY3.3321
208FFI|1|JStructure of tetramerized MapSPARTA upon guide RNA-mediated target DNA bindingELECTRON MICROSCOPY2.721
218SPO|1|OTetramerized activation of MapSPARTA bound with NAD+ELECTRON MICROSCOPY2.9819
228SP0|1|GSymmetric dimer of MapSPARTA bound with gRNA/tDNA hybridELECTRON MICROSCOPY3.3321
238FFI|1|OStructure of tetramerized MapSPARTA upon guide RNA-mediated target DNA bindingELECTRON MICROSCOPY2.721
248SPO|1|CTetramerized activation of MapSPARTA bound with NAD+ELECTRON MICROSCOPY2.9819
258FFI|1|CStructure of tetramerized MapSPARTA upon guide RNA-mediated target DNA bindingELECTRON MICROSCOPY2.721
268SPO|1|GTetramerized activation of MapSPARTA bound with NAD+ELECTRON MICROSCOPY2.9821
278FFI|1|GStructure of tetramerized MapSPARTA upon guide RNA-mediated target DNA bindingELECTRON MICROSCOPY2.721
288J9P|1|GSPARTA dimer bound with guide-targetELECTRON MICROSCOPY3.421
298J9P|1|ESPARTA dimer bound with guide-targetELECTRON MICROSCOPY3.421
308J7S|1|GStructure of the SPARTA complexELECTRON MICROSCOPY2.8419
318J7S|1|OStructure of the SPARTA complexELECTRON MICROSCOPY2.8419
328J7S|1|CStructure of the SPARTA complexELECTRON MICROSCOPY2.8419
338J7S|1|KStructure of the SPARTA complexELECTRON MICROSCOPY2.8419

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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