RNA 3D Hub //

Equivalence class NR_3.5_73426.10 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17EVO|1|H (rep)U2 splicesomal small nuclear RNAU2 snRNAHomo sapiensEukaryaRF00004The cryo-EM structure of the human 17S U2 snRNPElectron microscopy2.52022-08-03
28HK1|1|HU2 splicesomal small nuclear RNAU2 snRNAHomo sapiensEukaryaRF00004The cryo-EM structure of human pre-17S U2 snRNPElectron microscopy2.72023-03-08
38H6L|1|2AU2 splicesomal small nuclear RNApre-mRNA, U2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004Cryo-EM structure of human exon-defined spliceosome in the early B state.Electron microscopy2.62024-05-01
47Q4O|1|2+ 7Q4O|1|hU2 splicesomal small nuclear RNABPS oligo, U2 snRNAHomo sapiensEukaryaRF00004Substrate-bound A-like U2 snRNPElectron microscopy2.22022-03-30
58H6K|1|2AU2 splicesomal small nuclear RNApre-mRNA, U2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004Cryo-EM structure of human exon-defined spliceosome in the mature B state.Electron microscopy2.72024-05-01
67Q4P|1|2U2 splicesomal small nuclear RNAU2 snRNAHomo sapiensEukaryaRF00004U2 snRNP after ATP-dependent remodelling snRNPElectron microscopy2.22022-03-30
77Q3L|1|2U2 splicesomal small nuclear RNAU2 snRNAHomo sapiensEukaryaRF00004Human 17S U2 snRNP 5' domainElectron microscopy2.32022-03-30
88I0V|1|H+ 8I0V|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004 + RF00026The cryo-EM structure of human post-Bact complexElectron microscopy32024-07-31
98I0R|1|H+ 8I0R|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004 + RF00026The cryo-EM structure of human Bact-I complexElectron microscopy32024-07-31
107VPX|1|HU2 splicesomal small nuclear RNApre-mRNA, U2 snRNAHomo sapiensEukaryaRF00004The cryo-EM structure of the human pre-A complexElectron microscopy32023-05-03
118I0T|1|H+ 8I0T|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004 + RF00026The cryo-EM structure of human Bact-III complexElectron microscopy32024-07-31
128I0U|1|H+ 8I0U|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004 + RF00026The cryo-EM structure of human Bact-IV complexElectron microscopy3.32024-07-31
138H6E|1|2AU2 splicesomal small nuclear RNApre-mRNA, U2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.Electron microscopy3.22024-05-01
148H6J|1|2AU2 splicesomal small nuclear RNApre-mRNA, U2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state.Electron microscopy3.252024-05-01
156QX9|1|2U2 splicesomal small nuclear RNAAdML pre-mRNA, U2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).Electron microscopy3.282019-04-17
167ONB|1|H+ 7ONB|1|GU2 splicesomal small nuclear RNAMINX, RNU2Homo sapiensEukaryaRF00004Structure of the U2 5' module of the A3'-SSA complexElectron microscopy3.12021-08-04
178I0P|1|H+ 8I0P|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNAHomo sapiensEukaryaRF00004 + RF00026The cryo-EM structure of human pre-Bact complexElectron microscopy3.42024-07-31

Release history

Release3.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.364
Date2024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-04

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Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17Q4P|1|2U2 snRNP after ATP-dependent remodelling snRNPELECTRON MICROSCOPY2.231
27Q4O|1|2+ 7Q4O|1|hSubstrate-bound A-like U2 snRNPELECTRON MICROSCOPY2.224
36QX9|1|2Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).ELECTRON MICROSCOPY3.2894
47ONB|1|H+ 7ONB|1|GStructure of the U2 5' module of the A3'-SSA complexELECTRON MICROSCOPY3.132
57VPX|1|HThe cryo-EM structure of the human pre-A complexELECTRON MICROSCOPY3130
67EVO|1|HThe cryo-EM structure of the human 17S U2 snRNPELECTRON MICROSCOPY2.5148
78HK1|1|HThe cryo-EM structure of human pre-17S U2 snRNPELECTRON MICROSCOPY2.7148
87Q3L|1|2Human 17S U2 snRNP 5' domainELECTRON MICROSCOPY2.341
98H6E|1|2ACryo-EM structure of human exon-defined spliceosome in the late pre-B state.ELECTRON MICROSCOPY3.2109
108H6J|1|2ACryo-EM structure of human exon-defined spliceosome in the mature pre-B state.ELECTRON MICROSCOPY3.25109
118H6K|1|2ACryo-EM structure of human exon-defined spliceosome in the mature B state.ELECTRON MICROSCOPY2.7109
128H6L|1|2ACryo-EM structure of human exon-defined spliceosome in the early B state.ELECTRON MICROSCOPY2.6109
138I0V|1|H+ 8I0V|1|FThe cryo-EM structure of human post-Bact complexELECTRON MICROSCOPY3188
148I0U|1|H+ 8I0U|1|FThe cryo-EM structure of human Bact-IV complexELECTRON MICROSCOPY3.3188
158I0T|1|H+ 8I0T|1|FThe cryo-EM structure of human Bact-III complexELECTRON MICROSCOPY3188
168I0R|1|H+ 8I0R|1|FThe cryo-EM structure of human Bact-I complexELECTRON MICROSCOPY3188
178I0P|1|H+ 8I0P|1|FThe cryo-EM structure of human pre-Bact complexELECTRON MICROSCOPY3.4188

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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