Equivalence class NR_4.0_36308.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6SAE|1|R (rep) | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus (vulgare) | Cryo-EM structure of TMV in water | Electron microscopy | 1.9 | 2019-09-18 | |||
| 2 | 6SAG|1|R | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM structure of TMV with Ca2+ at low pH | Electron microscopy | 2 | 2019-09-18 | |||
| 3 | 6RLP|1|R | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 4 | 6RLP|1|Z | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 5 | 6RLP|1|a | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 6 | 6RLP|1|b | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 7 | 6RLP|1|c | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 8 | 6RLP|1|d | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 9 | 6RLP|1|e | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 10 | 6RLP|1|f | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 11 | 6RLP|1|g | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 12 | 6RLP|1|h | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 13 | 6RLP|1|i | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 14 | 6RLP|1|j | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 15 | 6RLP|1|k | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 16 | 6RLP|1|l | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 17 | 6RLP|1|m | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 18 | 6RLP|1|n | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 19 | 6RLP|1|o | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 20 | 6RLP|1|p | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 21 | 6RLP|1|q | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 22 | 6RLP|1|r | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 23 | 6RLP|1|s | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 24 | 6RLP|1|t | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 25 | 6RLP|1|u | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 26 | 6RLP|1|v | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Cryo-EM reconstruction of TMV coat protein | Electron microscopy | 2.3 | 2022-11-23 | |||
| 27 | 4UDV|1|R | 5'-D(*GP*AP*AP)-3' | Tobacco mosaic virus | Cryo-EM structure of TMV at 3.35 A resolution | Electron microscopy | 3.35 | 2014-12-31 | |||
| 28 | 7Q2R|1|B | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus (vulgare) | cryo iDPC-STEM structure recorded with CSA 4.0 | Electron microscopy | 3.5 | 2022-09-21 | |||
| 29 | 7Q2S|1|B | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus (vulgare) | cryo iDPC-STEM structure recorded with CSA 4.5 | Electron microscopy | 3.7 | 2022-09-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6RLP|1|r | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 2 | 6RLP|1|q | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 3 | 6RLP|1|Z | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 4 | 6RLP|1|e | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 5 | 6RLP|1|g | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 6 | 6RLP|1|t | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 7 | 6RLP|1|c | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 8 | 6RLP|1|s | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 9 | 6RLP|1|a | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 10 | 6RLP|1|o | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 11 | 6RLP|1|i | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 12 | 6RLP|1|m | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 13 | 6RLP|1|b | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 14 | 6RLP|1|k | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 15 | 6RLP|1|u | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 16 | 6RLP|1|v | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 17 | 6RLP|1|l | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 18 | 6RLP|1|j | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 19 | 6RLP|1|R | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 20 | 6RLP|1|d | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 21 | 6RLP|1|n | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 22 | 6RLP|1|f | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 23 | 6RLP|1|p | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 24 | 6RLP|1|h | Cryo-EM reconstruction of TMV coat protein | ELECTRON MICROSCOPY | 2.3 | 3 | |
| 25 | 6SAE|1|R | Cryo-EM structure of TMV in water | ELECTRON MICROSCOPY | 1.9 | 3 | |
| 26 | 6SAG|1|R | Cryo-EM structure of TMV with Ca2+ at low pH | ELECTRON MICROSCOPY | 2 | 3 | |
| 27 | 4UDV|1|R | Cryo-EM structure of TMV at 3.35 A resolution | ELECTRON MICROSCOPY | 3.35 | 3 | |
| 28 | 7Q2S|1|B | cryo iDPC-STEM structure recorded with CSA 4.5 | ELECTRON MICROSCOPY | 3.7 | 3 | |
| 29 | 7Q2R|1|B | cryo iDPC-STEM structure recorded with CSA 4.0 | ELECTRON MICROSCOPY | 3.5 | 3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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