Equivalence class NR_4.0_91171.6 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8JDK|1|F (rep) | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | Electron microscopy | 2.26 | 2023-12-06 |
| 2 | 8JDL|1|F | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | Electron microscopy | 2.42 | 2023-12-06 |
| 3 | 8JDJ|1|F | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | Electron microscopy | 2.5 | 2023-12-06 |
| 4 | 8JDM|1|F | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state) | Electron microscopy | 2.67 | 2023-12-06 |
| 5 | 9GMO|1|C | 5.8S ribosomal RNA | 5.8S rRNA | Homo sapiens | Eukarya | RF00002 | eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16 | Electron microscopy | 2.59 | 2024-10-02 |
| 6 | 9G8M|1|L8 | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | human 80S ribosome bound by a SKI2-exosome complex | Electron microscopy | 3.3 | 2024-10-23 |
| 7 | 8Y0X|1|L8 | 5.8S ribosomal RNA | 5.8S rRNA | Homo sapiens | Eukarya | RF00002 | Dormant ribosome with SERBP1 | Electron microscopy | 3.3 | 2024-02-07 |
| 8 | 8Y0W|1|L8 | 5.8S ribosomal RNA | 5.8S rRNA | Homo sapiens | Eukarya | RF00002 | dormant ribosome with eIF5A, eEF2 and SERBP1 | Electron microscopy | 3.4 | 2024-02-07 |
| 9 | 8ONY|1|8 | 5.8S ribosomal RNA | 5.8S rRNA | Homo sapiens | Eukarya | RF00002 | Human Methionine Aminopeptidase 2 at the 80S ribosome | Electron microscopy | 2.92 | 2024-02-21 |
| 10 | 6SXO|1|L8 | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Cryo-EM structure of the human Ebp1-ribosome complex | Electron microscopy | 3.3 | 2020-02-19 |
Release history
| Release | 3.358 |
|---|---|
| Date | 2024-10-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 9G8M|1|L8 | human 80S ribosome bound by a SKI2-exosome complex | ELECTRON MICROSCOPY | 3.3 | 157 | |
| 2 | 8JDL|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | ELECTRON MICROSCOPY | 2.42 | 155 | |
| 3 | 8JDM|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state) | ELECTRON MICROSCOPY | 2.67 | 155 | |
| 4 | 8JDJ|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.5 | 155 | |
| 5 | 8JDK|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.26 | 155 | |
| 6 | 9GMO|1|C | eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16 | ELECTRON MICROSCOPY | 2.59 | 157 | |
| 7 | 8Y0W|1|L8 | dormant ribosome with eIF5A, eEF2 and SERBP1 | ELECTRON MICROSCOPY | 3.4 | 156 | |
| 8 | 8Y0X|1|L8 | Dormant ribosome with SERBP1 | ELECTRON MICROSCOPY | 3.3 | 156 | |
| 9 | 6SXO|1|L8 | Cryo-EM structure of the human Ebp1-ribosome complex | ELECTRON MICROSCOPY | 3.3 | 58 | |
| 10 | 8ONY|1|8 | Human Methionine Aminopeptidase 2 at the 80S ribosome | ELECTRON MICROSCOPY | 2.92 | 58 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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