Equivalence class NR_all_42252.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V6E|1|CX (rep) | messenger RNA, P-site tRNA ASL fragment | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 | ||||
| 2 | 1KKA|1|A | anticodon stem-loop of tRNA(PHE) | Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) | Solution NMR | 2002-07-17 | |||||
| 3 | 1J4Y|1|A | anticodon stem-loop of tRNA(Phe) | Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) | Solution NMR | 2002-07-17 | |||||
| 4 | 4V6E|1|AX | messenger RNA, P-site tRNA ASL fragment | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 | ||||
| 5 | 4V6E|1|CV | messenger RNA, P-site tRNA ASL fragment | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 | ||||
| 6 | 2AWQ|3|A | 5'-R(*GP*GP*GP*GP*AP*(PSU)P*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*C)-3' | Solution Structure of pseudouridine-32 modified anticodon stem-loop of E. coli tRNAPhe | Solution NMR | 2006-01-17 |
Release history
| Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_42252.1 | NR_all_05750.1 | 2.46 | (1) 1J4Y|1|A | (5) 1KKA|1|A, 2AWQ|3|A, 4V6E|1|AX, 4V6E|1|CV, 4V6E|1|CX | (0) |
| NR_all_42252.1 | NR_all_49771.1 | 2.46 | (3) 4V6E|1|AX, 4V6E|1|CV, 4V6E|1|CX | (3) 1J4Y|1|A, 1KKA|1|A, 2AWQ|3|A | (0) |
| NR_all_42252.1 | NR_all_57521.1 | 2.46 | (1) 2AWQ|3|A | (5) 1J4Y|1|A, 1KKA|1|A, 4V6E|1|AX, 4V6E|1|CV, 4V6E|1|CX | (0) |
| NR_all_42252.1 | NR_all_92061.1 | 2.46 | (1) 1KKA|1|A | (5) 1J4Y|1|A, 2AWQ|3|A, 4V6E|1|AX, 4V6E|1|CV, 4V6E|1|CX | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_42252.1 | NR_all_02491.1 | 2.93 | (3) 4V6E|1|AX, 4V6E|1|CV, 4V6E|1|CX | (3) 1J4Y|1|A, 1KKA|1|A, 2AWQ|3|A | (0) |
| NR_all_42252.1 | NR_all_44263.1 | 2.93 | (1) 2AWQ|3|A | (5) 1J4Y|1|A, 1KKA|1|A, 4V6E|1|AX, 4V6E|1|CV, 4V6E|1|CX | (0) |
| NR_all_42252.1 | NR_all_63765.1 | 2.93 | (1) 1KKA|1|A | (5) 1J4Y|1|A, 2AWQ|3|A, 4V6E|1|AX, 4V6E|1|CV, 4V6E|1|CX | (0) |
| NR_all_42252.1 | NR_all_94445.1 | 2.93 | (1) 1J4Y|1|A | (5) 1KKA|1|A, 2AWQ|3|A, 4V6E|1|AX, 4V6E|1|CV, 4V6E|1|CX | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4V6E|1|CX | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.71 | 17 | |
| 2 | 4V6E|1|AX | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.71 | 17 | |
| 3 | 4V6E|1|CV | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.71 | 17 | |
| 4 | 2AWQ|3|A | Solution Structure of pseudouridine-32 modified anticodon stem-loop of E. coli tRNAPhe | SOLUTION NMR | 16 | ||
| 5 | 1J4Y|1|A | Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) | SOLUTION NMR | 17 | ||
| 6 | 1KKA|1|A | Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) | SOLUTION NMR | 17 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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