#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16TNU|1|m (rep)Transfer RNAA-site tRNA, mRNASaccharomyces cerevisiaeEukaryaRF00005Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.12020-04-22
26HD7|1|ATransfer RNAtRNASaccharomyces cerevisiaeEukaryaRF00005Cryo-EM structure of the ribosome-NatA complexElectron microscopy3.42018-12-19
35MC6|1|mTransfer RNAA-site tRNA, mRNASaccharomyces cerevisiaeEukaryaRF00005Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeElectron microscopy3.82017-01-18
47NRC|1|SmTransfer RNARNA (5'-R(P*AP*UP*GP*AP*AP*A)-3'), tRNA (76-MER)Saccharomyces cerevisiae S288CEukaryaRF00005Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AElectron microscopy3.92021-05-05
55GAK|1|ATransfer RNAThe A-site tRNA was modeled based on an E. coli tRNA-LysSaccharomyces cerevisiaeEukaryaRF00005Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.882016-02-24

Release history

Release3.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.203
Date2021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_45609.4NR_all_45609.33.177(4) 5GAK|1|A, 5MC6|1|m, 6HD7|1|A, 6TNU|1|m(1) 7NRC|1|Sm(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_45609.4NR_all_45609.53.204(5) 5GAK|1|A, 5MC6|1|m, 6HD7|1|A, 6TNU|1|m, 7NRC|1|Sm(0) (1) 7RR5|1|A

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16TNU|1|mYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.176
27NRC|1|SmStructure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.976
35MC6|1|mCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.876
45GAK|1|AYeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.8876
56HD7|1|ACryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.476

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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