Equivalence class NR_all_56118.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ASO|1|I (rep) | U6 spliceosomal RNA | Saccharomyces cerevisiae strain HB_S_GIMBLETTROAD_9 chromosome XII sequence | Saccharomyces cerevisiae | Eukarya | RF00026 | Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA | X-ray diffraction | 2.71 | 2018-05-09 |
| 2 | 5VSU|1|I | U6 spliceosomal RNA | Saccharomyces cerevisiae strain T8 chromosome XII sequence | Saccharomyces cerevisiae | Eukarya | RF00026 | Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA | X-ray diffraction | 3.1 | 2018-05-09 |
| 3 | 5MPS|1|6 | U6 spliceosomal RNA | Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, U2 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzyme | Saccharomyces cerevisiae | Eukarya | RF00026 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 3.85 | 2017-01-18 |
| 4 | 5YLZ|1|D | U6 spliceosomal RNA | mRNA/intron lariat, U2 snRNA, U6 snRNA | Saccharomyces cerevisiae | Eukarya | RF00026 | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | Electron microscopy | 3.6 | 2018-07-18 |
| 5 | 5Y88|1|D | U6 spliceosomal RNA | Intron lariat, U2 snRNA, U6 snRNA | Saccharomyces cerevisiae | Eukarya | RF00026 | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | Electron microscopy | 3.46 | 2018-08-01 |
| 6 | 5GMK|1|E+ 5GMK|1|L | U6 spliceosomal RNA + U2 splicesomal small nuclear RNA | 5'-Splicing Site, Intron_BPS, U2 snRNA, U6 snRNA | Saccharomyces cerevisiae | Eukarya | RF00026 + RF00004 | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | Electron microscopy | 3.4 | 2016-08-17 |
| 7 | 5WSG|1|E | U6 spliceosomal RNA | 3'-intron-lariat, 5'-intron-lariat, RNA (91-MER), Saccharomyces cerevisiae S288c SNR6 snRNA | Saccharomyces cerevisiae | Eukarya | RF00026 | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | Electron microscopy | 4 | 2017-01-25 |
| 8 | 5LQW|1|6+ 5LQW|1|2 | U6 spliceosomal RNA + U2 splicesomal small nuclear RNA | actin pre-mRNA, U2 snRNA, U6 snRNA | Saccharomyces cerevisiae | Eukarya | RF00026 + RF00004 | yeast activated spliceosome | Electron microscopy | 5.8 | 2016-10-05 |
Release history
| Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_56118.6 | NR_all_56118.5 | 3.33 | (7) 5GMK|1|E+5GMK|1|L, 5LQW|1|6+5LQW|1|2, 5MPS|1|6, 5VSU|1|I, 5WSG|1|E, 5YLZ|1|D, 6ASO|1|I | (1) 5Y88|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_56118.6 | NR_all_02335.1 | 3.98 | (1) 5VSU|1|I | (7) 5GMK|1|E+5GMK|1|L, 5LQW|1|6+5LQW|1|2, 5MPS|1|6, 5WSG|1|E, 5Y88|1|D, 5YLZ|1|D, 6ASO|1|I | (0) |
| NR_all_56118.6 | NR_all_56904.1 | 3.98 | (1) 5LQW|1|6+5LQW|1|2 | (7) 5GMK|1|E+5GMK|1|L, 5MPS|1|6, 5VSU|1|I, 5WSG|1|E, 5Y88|1|D, 5YLZ|1|D, 6ASO|1|I | (0) |
| NR_all_56118.6 | NR_all_82055.1 | 3.98 | (1) 6ASO|1|I | (7) 5GMK|1|E+5GMK|1|L, 5LQW|1|6+5LQW|1|2, 5MPS|1|6, 5VSU|1|I, 5WSG|1|E, 5Y88|1|D, 5YLZ|1|D | (0) |
| NR_all_56118.6 | NR_all_83830.1 | 3.98 | (5) 5GMK|1|E+5GMK|1|L, 5MPS|1|6, 5WSG|1|E, 5Y88|1|D, 5YLZ|1|D | (3) 5LQW|1|6+5LQW|1|2, 5VSU|1|I, 6ASO|1|I | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5LQW|1|6+ 5LQW|1|2 | yeast activated spliceosome | ELECTRON MICROSCOPY | 5.8 | 102 | |
| 2 | 5YLZ|1|D | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 103 | |
| 3 | 5WSG|1|E | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | ELECTRON MICROSCOPY | 4 | 103 | |
| 4 | 5GMK|1|E+ 5GMK|1|L | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | ELECTRON MICROSCOPY | 3.4 | 103 | |
| 5 | 5Y88|1|D | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | ELECTRON MICROSCOPY | 3.46 | 101 | |
| 6 | 5MPS|1|6 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 3.85 | 99 | |
| 7 | 6ASO|1|I | Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA | X-RAY DIFFRACTION | 2.71 | 69 | |
| 8 | 5VSU|1|I | Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA | X-RAY DIFFRACTION | 3.1 | 72 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: