Equivalence class NR_all_62979.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2NR0|1|E (rep) | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||||
| 2 | 2NR0|1|G | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||||
| 3 | 2NR0|1|H | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||||
| 4 | 2NRE|1|F | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 4 | 2007-05-15 | ||||
| 5 | 4V8C|1|CB | MRNA, TRNA-LEU | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||||
| 6 | 4V8B|1|AB | Transfer RNA | MRNA, TRNA-LEU | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 7 | 2NR0|1|F | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||||
| 8 | 4V8C|1|DB | MRNA, TRNA-LEU | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||||
| 9 | 4WSM|1|2K | Transfer RNA | mRNA, tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 10 | 4WSM|1|2L | Transfer RNA | mRNA, tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 11 | 4V8B|1|CB | Transfer RNA | MRNA, TRNA-LEU | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 12 | 4V87|1|BB | MRNA, TRNA-LEU | synthetic construct | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 | |||
| 13 | 4WSM|1|3L | Transfer RNA | tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 14 | 4WSM|1|1L | Transfer RNA | mRNA, tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 15 | 4WSM|1|1K | Transfer RNA | mRNA, tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 16 | 4V87|1|CB | MRNA, TRNA-LEU | synthetic construct | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 | |||
| 17 | 4WSM|1|3K | Transfer RNA | tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
Release history
| Release | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_62979.1 | NR_all_31492.1 | 2.27 | (11) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NR0|1|H, 2NRE|1|F, 4V87|1|BB, 4V87|1|CB, 4V8B|1|AB, 4V8B|1|CB, 4V8C|1|CB, 4V8C|1|DB | (6) 4WSM|1|1K, 4WSM|1|1L, 4WSM|1|2K, 4WSM|1|2L, 4WSM|1|3K, 4WSM|1|3L | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_62979.1 | NR_all_14663.1 | 2.93 | (5) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NR0|1|H, 2NRE|1|F | (12) 4V87|1|BB, 4V87|1|CB, 4V8B|1|AB, 4V8B|1|CB, 4V8C|1|CB, 4V8C|1|DB, 4WSM|1|1K, 4WSM|1|1L, 4WSM|1|2K, 4WSM|1|2L, 4WSM|1|3K, 4WSM|1|3L | (0) |
| NR_all_62979.1 | NR_all_40540.1 | 2.93 | (10) 4V87|1|BB, 4V87|1|CB, 4V8B|1|AB, 4V8B|1|CB, 4V8C|1|CB, 4V8C|1|DB, 4WSM|1|1K, 4WSM|1|1L, 4WSM|1|2K, 4WSM|1|2L | (7) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NR0|1|H, 2NRE|1|F, 4WSM|1|3K, 4WSM|1|3L | (1) 5KCR|1|1x |
| NR_all_62979.1 | NR_all_55925.1 | 2.93 | (2) 4WSM|1|3K, 4WSM|1|3L | (15) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NR0|1|H, 2NRE|1|F, 4V87|1|BB, 4V87|1|CB, 4V8B|1|AB, 4V8B|1|CB, 4V8C|1|CB, 4V8C|1|DB, 4WSM|1|1K, 4WSM|1|1L, 4WSM|1|2K, 4WSM|1|2L | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 2NR0|1|G | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 67 | |
| 2 | 2NR0|1|F | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 74 | |
| 3 | 2NR0|1|H | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 65 | |
| 4 | 2NR0|1|E | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 81 | |
| 5 | 2NRE|1|F | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 4 | 56 | |
| 6 | 4WSM|1|2K | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 73 | |
| 7 | 4WSM|1|1K | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 | |
| 8 | 4V8C|1|CB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 | |
| 9 | 4V87|1|BB | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 | |
| 10 | 4V8B|1|AB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 | |
| 11 | 4V8C|1|DB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 | |
| 12 | 4V8B|1|CB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 | |
| 13 | 4V87|1|CB | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 | |
| 14 | 4WSM|1|1L | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 | |
| 15 | 4WSM|1|2L | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 74 | |
| 16 | 4WSM|1|3L | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 75 | |
| 17 | 4WSM|1|3K | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 77 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: