Equivalence class NR_3.0_74981.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4RKV|1|A (rep) | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.88 | 2014-11-19 | ||
| 2 | 4RNE|1|A | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 3 | 4RNE|1|F | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 4 | 1J8G|1|A | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 5 | 4XK0|1|A | RNA (5'-(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-ray diffraction | 1.08 | 2015-02-11 | ||
| 6 | 4RJ1|1|A | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.92 | 2014-11-12 | ||
| 7 | 4RKV|1|B | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.88 | 2014-11-19 | ||
| 8 | 1J8G|1|B | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 9 | 4RJ1|1|B | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.92 | 2014-11-12 | ||
| 10 | 4RNE|1|B | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 11 | 1J8G|1|C | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 12 | 4XK0|1|C | RNA (5'-(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-ray diffraction | 1.08 | 2015-02-11 | ||
| 13 | 4RNE|1|C | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 14 | 1J8G|1|D | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 15 | 4RNE|1|D | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 16 | 4RNE|1|E | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 17 | 4RNE|1|G | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 18 | 4RNE|1|H | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 |
Release history
| Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_74981.1 | NR_all_49177.1 | 2.46 | (1) 4XK0|1|A | (17) 4RJ1|1|B, 4RNE|1|G, 1J8G|1|A, 4RNE|1|B, 4RJ1|1|A, 4RNE|1|F, 4RNE|1|A, 1J8G|1|D, 4RNE|1|E, 4RKV|1|B, 4XK0|1|C, 1J8G|1|C, 4RNE|1|D, 4RKV|1|A, 4RNE|1|H, 1J8G|1|B, 4RNE|1|C | (0) |
| NR_3.0_74981.1 | NR_all_50180.1 | 2.46 | (1) 4RJ1|1|B | (17) 4RNE|1|E, 4RKV|1|B, 4XK0|1|A, 1J8G|1|B, 4RNE|1|D, 4RKV|1|A, 4RNE|1|H, 1J8G|1|A, 4RNE|1|C, 4RJ1|1|A, 4RNE|1|G, 4RNE|1|B, 1J8G|1|D, 4RNE|1|F, 4RNE|1|A, 4XK0|1|C, 1J8G|1|C | (0) |
| NR_3.0_74981.1 | NR_all_50286.1 | 2.46 | (2) 4RKV|1|B, 1J8G|1|B | (16) 4RNE|1|E, 4RJ1|1|A, 4RNE|1|G, 4RKV|1|A, 4XK0|1|A, 4RNE|1|B, 1J8G|1|A, 4RNE|1|D, 1J8G|1|D, 4RNE|1|F, 4RJ1|1|B, 4RNE|1|H, 4RNE|1|A, 4XK0|1|C, 4RNE|1|C, 1J8G|1|C | (0) |
| NR_3.0_74981.1 | NR_all_83491.2 | 2.46 | (14) 4RNE|1|B, 4RNE|1|D, 1J8G|1|A, 4RNE|1|G, 4RJ1|1|A, 4RNE|1|A, 4XK0|1|C, 4RNE|1|C, 4RNE|1|E, 1J8G|1|C, 4RNE|1|H, 4RKV|1|A, 4RNE|1|F, 1J8G|1|D | (4) 4RKV|1|B, 4XK0|1|A, 1J8G|1|B, 4RJ1|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_74981.1 | NR_3.0_09702.1 | 2.93 | (1) 4RJ1|1|B | (17) 4RNE|1|A, 1J8G|1|A, 4XK0|1|C, 4RNE|1|C, 1J8G|1|C, 4RNE|1|E, 4RJ1|1|A, 4RNE|1|G, 4RKV|1|B, 4XK0|1|A, 4RNE|1|B, 1J8G|1|B, 4RNE|1|D, 1J8G|1|D, 4RNE|1|F, 4RKV|1|A, 4RNE|1|H | (0) |
| NR_3.0_74981.1 | NR_3.0_31074.1 | 2.93 | (14) 4RNE|1|E, 4XK0|1|C, 1J8G|1|C, 4RNE|1|A, 4RNE|1|G, 4RJ1|1|A, 4RNE|1|C, 4RNE|1|F, 1J8G|1|D, 4RNE|1|B, 4RNE|1|H, 1J8G|1|A, 4RKV|1|A, 4RNE|1|D | (4) 4RKV|1|B, 4XK0|1|A, 1J8G|1|B, 4RJ1|1|B | (0) |
| NR_3.0_74981.1 | NR_3.0_41566.1 | 2.93 | (2) 1J8G|1|B, 4RKV|1|B | (16) 4XK0|1|A, 4RNE|1|B, 1J8G|1|A, 4RNE|1|D, 1J8G|1|D, 4RNE|1|F, 4RJ1|1|B, 4RNE|1|H, 4RNE|1|A, 4XK0|1|C, 4RNE|1|C, 1J8G|1|C, 4RNE|1|E, 4RJ1|1|A, 4RNE|1|G, 4RKV|1|A | (0) |
| NR_3.0_74981.1 | NR_3.0_81309.1 | 2.93 | (1) 4XK0|1|A | (17) 4RNE|1|G, 4RKV|1|B, 1J8G|1|A, 4XK0|1|C, 4RNE|1|B, 1J8G|1|C, 4RNE|1|D, 4RJ1|1|A, 4RNE|1|F, 4RKV|1|A, 4RNE|1|H, 4RNE|1|A, 1J8G|1|B, 4RNE|1|C, 1J8G|1|D, 4RNE|1|E, 4RJ1|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4RJ1|1|B | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.92 | 6 |
| 2 | 4XK0|1|C | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-RAY DIFFRACTION | 1.08 | 6 |
| 3 | 1J8G|1|A | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 |
| 4 | 4RNE|1|B | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 |
| 5 | 4RNE|1|D | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 |
| 6 | 4RKV|1|A | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.88 | 10 |
| 7 | 4RNE|1|C | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 |
| 8 | 4RNE|1|A | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 9 |
| 9 | 4RNE|1|F | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 9 |
| 10 | 4RNE|1|E | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 |
| 11 | 4RNE|1|H | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 |
| 12 | 4RNE|1|G | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 |
| 13 | 1J8G|1|C | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 |
| 14 | 4RJ1|1|A | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.92 | 6 |
| 15 | 1J8G|1|D | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 |
| 16 | 1J8G|1|B | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 |
| 17 | 4RKV|1|B | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.88 | 6 |
| 18 | 4XK0|1|A | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-RAY DIFFRACTION | 1.08 | 6 |