4V7R Summary

View in PDB or NDB
Structure Title
4V7R Summary
Authors
Release Date
2014-07-09
Experimental technique
X-RAY DIFFRACTION
Resolution
4.0 Å
Chains
  • 8 RNA chains from Saccharomyces cerevisiae
  • 131 other chains
Compounds
18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S5, 40S ribosomal protein S9-A, 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17-A, 40S ribosomal protein S18, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S22-A, 40S ribosomal protein S23, 40S ribosomal protein S25-A, 40S ribosomal protein S28-A, 40S ribosomal protein S29-A, Guanine nucleotide-binding protein subunit beta-like protein; RACK-1, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, 25S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L1, 60S ribosomal protein L2, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L21-A, 60S ribosomal protein L23, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L28, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L35, 60S ribosomal protein L37-A, 60S ribosomal protein L39, 60S ribosomal protein L42, 60S ribosomal protein L43, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S5, 40S ribosomal protein S9-A, 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17-A, 40S ribosomal protein S18, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S22-A, 40S ribosomal protein S23, 40S ribosomal protein S25-A, 40S ribosomal protein S28-A, 40S ribosomal protein S29-A, Guanine nucleotide-binding protein subunit beta-like protein; RACK-1, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, 25S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L1, 60S ribosomal protein L2, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L12, 60S acidic ribosomal protein P0, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L21-A, 60S ribosomal protein L23, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L28, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L35, 60S ribosomal protein L37-A, 60S ribosomal protein L39, 60S ribosomal protein L42, 60S ribosomal protein L43, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 4V7R contains:
  • 504 internal loops from 0 motif groups
  • 228 hairpin loops from 0 motif groups
  • 46 three-way junctions
More

3D Redundancy

4V7R has chains which belong to the following equivalence classes in the current representative set:

Similar structures

4V88 6TNU 4U55 6S47 6FAI 4U53 5JUP 4U50 6Z6K 6Z6J 6RBD 4U53 6SV4 4U56 4U51 4U4Y 4U3N 4U4Y 4U3N 6SV4 6SV4 4U55 6XIR 6T7T 5M1J 4U4Z 4U4N 4U50 4U51 6T7I 4U56 7NRC 4U4O 4V8Y 6GQ1 5LL6 6I7O 6I7O 6ZCE 3J6Y 3J6X 3J77 3J78 6ZU9 4V8Z 4U4O 7NRD 5MC6 6T83 6T83 5JUO 5JUT 5JUU 6RBE 6EML 6GQB 6Y7C 5JUS 6GQV 6XIQ 4V6I 7B7D 5TBW 5ON6 5NDV 5NDV 5NDG 5NDG 5TGM 5TGM 5DAT 5TGA 5DGE 5DGV 5LYB 5NDW 4V88 5TBW 6HHQ 5OBM 5I4L 5MEI 5NDW 5LYB 5I4L 5MEI 5OBM 5ON6 6HHQ 5DGF 5DC3 4U3U 4U3M 4U4Q 4U4U 4U52 4U3M 4U6F 4U4N 4U52 4U4U 4U4Q 6Q8Y 4U4Z 6ZVI 7A1G 5DAT 5TGA 5DGV 5DGE 5DGF 5DC3 6T4Q 4U4R 6WOO 6TB3 6SNT 4U3U 4U4R 4U6F
Structures from NR_all_03510.40
BGSU RNA Site