4V7R Summary
- Structure Title
- 4V7R Summary
- Authors
- Release Date
- 2014-07-09
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 4.0 Å
- Chains
-
- 8 RNA chains from Saccharomyces cerevisiae
- 131 other chains
- Compounds
- 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S5, 40S ribosomal protein S9-A, 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17-A, 40S ribosomal protein S18, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S22-A, 40S ribosomal protein S23, 40S ribosomal protein S25-A, 40S ribosomal protein S28-A, 40S ribosomal protein S29-A, Guanine nucleotide-binding protein subunit beta-like protein; RACK-1, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, 25S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L1, 60S ribosomal protein L2, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L21-A, 60S ribosomal protein L23, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L28, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L35, 60S ribosomal protein L37-A, 60S ribosomal protein L39, 60S ribosomal protein L42, 60S ribosomal protein L43, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S5, 40S ribosomal protein S9-A, 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17-A, 40S ribosomal protein S18, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S22-A, 40S ribosomal protein S23, 40S ribosomal protein S25-A, 40S ribosomal protein S28-A, 40S ribosomal protein S29-A, Guanine nucleotide-binding protein subunit beta-like protein; RACK-1, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, 25S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L1, 60S ribosomal protein L2, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L12, 60S acidic ribosomal protein P0, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L21-A, 60S ribosomal protein L23, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L28, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L35, 60S ribosomal protein L37-A, 60S ribosomal protein L39, 60S ribosomal protein L42, 60S ribosomal protein L43, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure
Pairwise Interactions
Interactions annotated by FR3D:- 3,162 base-pairs
- 9,028 base-stacking
- 3,360 base-phosphate
- 682 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4V7R contains:- 504 internal loops from 0 motif groups
- 228 hairpin loops from 0 motif groups
- 46 three-way junctions
3D Redundancy
4V7R has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_90506.49 (2)
- NR_20.0_03510.46 (2)
- NR_20.0_18586.46 (2)
- NR_4.0_90506.49 (2)
- NR_4.0_03510.46 (2)
- NR_4.0_18586.46 (2)
- NR_all_90506.49 (2)
- NR_all_03510.46 (2)
- NR_all_18586.46 (2)
Similar structures
4V88 6T83 6KE6 5MC6 7NRC 4U56 6LQP 4U56 6SV4 6EML 6T83 6XIQ 5JUS 6GQB 6Y7C 5JUU 5JUT 6RBE 5JUO 4U53 6RBD 6S47 4U3N 4U51 4U50 6T7I 4U4N 5M1J 4U55 4U4Y 4U51 4U53 5JUP 4U50 6FAI 6Z6J 6Z6K 6TNU 4U55 6GQV 7NRD 6ZCE 7AJT 6LQT 6LQV 3J6Y 3J6X 3J77 3J78 6ZU9 6ZQF 4V8Z 7D5T 5TZS 6ZQE 6LQR 5WYJ 4V6I 6I7O 5WYK 7D5S 6ZQG 4U4O 4U4O 6LQU 4V8Y 7D4I 6ZQD 6GQ1 7AJU 6LQS 5LL6 6LQQ 7SUK 6ZQB 6ZQC 5WLC 6I7O 7D63 6T7T 5TBW 5NDG 5NDG 5TGM 5TGM 5DAT 5TGA 5DGE 5DGV 5DGF 5DC3 5DAT 5TGA 5DGV 5DGE 5DGF 5ON6 5NDV 5NDV 4V88 5TBW 7OSA 6HHQ 5OBM 5I4L 5MEI 5NDW 5LYB 5I4L 5OBM 7OSM 5MEI 5ON6 5NDW 6HHQ 5LYB 5DC3 7PZY 4U52 4U3M 7RR5 4U52 4U4U 4U6F 4U4Q 4U4N 6Q8Y 4U6F 4U4Z 6XIR 7B7D 6SV4 6SV4 4U4Y 4U3N 4U4U 4U4Q 4U3M 7Q08 6T4Q 7MPJ 7Q0F 7Q0R 7Q0P 6WOO 4U4R 6TB3 6SNT 4U4R 4U3U 7A1G 6ZVI 4U3U 7N8B 7MPI 4U4ZStructures from NR_all_03510.46