4V7R Summary
- Structure Title
- 4V7R Summary
- Authors
- Release Date
- 2014-07-09
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 4.0 Å
- Chains
-
- 8 RNA chains from Saccharomyces cerevisiae
- 131 other chains
- Compounds
- 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S5, 40S ribosomal protein S9-A, 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17-A, 40S ribosomal protein S18, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S22-A, 40S ribosomal protein S23, 40S ribosomal protein S25-A, 40S ribosomal protein S28-A, 40S ribosomal protein S29-A, Guanine nucleotide-binding protein subunit beta-like protein; RACK-1, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, 25S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L1, 60S ribosomal protein L2, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L21-A, 60S ribosomal protein L23, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L28, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L35, 60S ribosomal protein L37-A, 60S ribosomal protein L39, 60S ribosomal protein L42, 60S ribosomal protein L43, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S5, 40S ribosomal protein S9-A, 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17-A, 40S ribosomal protein S18, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S22-A, 40S ribosomal protein S23, 40S ribosomal protein S25-A, 40S ribosomal protein S28-A, 40S ribosomal protein S29-A, Guanine nucleotide-binding protein subunit beta-like protein; RACK-1, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, 25S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L1, 60S ribosomal protein L2, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L12, 60S acidic ribosomal protein P0, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L21-A, 60S ribosomal protein L23, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L28, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L35, 60S ribosomal protein L37-A, 60S ribosomal protein L39, 60S ribosomal protein L42, 60S ribosomal protein L43, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure
Pairwise Interactions
Interactions annotated by FR3D:- 3,162 base-pairs
- 9,028 base-stacking
- 3,360 base-phosphate
- 682 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4V7R contains:- 504 internal loops from 0 motif groups
- 228 hairpin loops from 0 motif groups
- 46 three-way junctions
3D Redundancy
4V7R has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_90506.61 (2)
- NR_20.0_18586.56 (2)
- NR_20.0_03510.52 (2)
- NR_4.0_90506.61 (2)
- NR_4.0_18586.56 (2)
- NR_4.0_03510.52 (2)
- NR_all_90506.61 (2)
- NR_all_18586.56 (2)
- NR_all_03510.52 (2)
Similar structures
4V88 5JUO 6T83 6EML 6T83 6KE6 5MC6 8BQD 7NRC 8C83 6RBE 5JUT 5JUU 6ZQG 7NRD 7ZUW 6GQV 6XIQ 5JUS 7WTR 6GQB 6Y7C 8BQX 4U56 6TNU 4U55 7ZPQ 8C00 4U51 4U4Y 6S47 4U3N 4U51 6Z6K 6Z6J 6LQP 4U56 6SV4 4U53 6RBD 4U53 5JUP 4U50 6FAI 4U50 7D63 3J6X 3J6Y 6LQV 6LQT 7AJT 6ZCE 6I7O 5WYK 7D5S 3J77 3J78 4V6I 5WYJ 6LQR 6ZQE 5TZS 7D5T 4V8Z 6ZQF 6ZU9 6I7O 5WLC 7WTQ 7WTM 4V8Y 7WTP 6LQU 7WTO 4U4O 7WTL 7WTN 7D4I 6ZQD 7ZRS 6ZQC 6ZQB 7SUK 6LQQ 5LL6 6LQS 7AJU 6GQ1 4U4O 6T4Q 5DGF 5DGV 5DGE 5TGA 5DAT 5TGM 5TGM 5DC3 5DAT 7Q08 7ZUX 7PZY 7ZW0 5DC3 5DGF 5DGE 5DGV 5TGA 5NDG 5NDG 5LYB 5NDW 5MEI 5I4L 5OBM 6HHQ 7OSA 5TBW 4V88 5I4L 5OBM 5ON6 5NDV 5NDV 5LYB 6HHQ 5NDW 5ON6 5MEI 7OSM 5TBW 6T7I 6XIR 4U4Z 4U6F 6Q8Y 4U4N 4U4Q 4U6F 4U4U 4U52 7B7D 8CAS 4U4N 5M1J 4U55 6T7T 4U4Z 4U3N 4U4Y 6SV4 6SV4 7RR5 4U3M 4U3U 4U4R 6SNT 6TB3 4U4R 6WOO 7Q0P 7Q0R 7Q0F 7A1G 6ZVI 4U52 4U4U 4U4Q 4U3M 8C01 7MPI 7N8B 4U3U 8CAH 7MPJStructures from NR_all_03510.52