4V7R Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V7R_001 | 1/A1/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_4V7R_229 | 1/A1/71:82 | No text annotation | ||
| HL_4V7R_003 | 1/A1/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_4V7R_004 | 1/A1/190:195 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V7R_005 | 1/A1/230:235 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_4V7R_006 | 1/A1/275:281 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V7R_007 | 1/A1/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_4V7R_008 | 1/A1/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_4V7R_009 | 1/A1/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_4V7R_010 | 1/A1/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_4V7R_011 | 1/A1/450:456 | No text annotation | ||
| HL_4V7R_012 | 1/A1/491:496 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_4V7R_013 | 1/A1/523:530 | No text annotation | ||
| HL_4V7R_014 | 1/A1/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_4V7R_016 | 1/A1/715:723 | No text annotation | geometric HL_8KAL_003 HL_75660.5 | |
| HL_4V7R_017 | 1/A1/764:772 | No text annotation | geometric HL_4V88_203 NA | |
| HL_4V7R_018 | 1/A1/777:783 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_4V7R_019 | 1/A1/827:845 | No text annotation | homologous HL_8P9A_208 NA | |
| HL_4V7R_020 | 1/A1/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_4V7R_021 | 1/A1/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_4V7R_022 | 1/A1/997:1007 | No text annotation | geometric HL_4V88_208 NA | |
| HL_4V7R_230 | 1/A1/1054:1065 | No text annotation | ||
| HL_4V7R_023 | 1/A1/1055:1064 | No text annotation | ||
| HL_4V7R_024 | 1/A1/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_4V7R_025 | 1/A1/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_4V7R_026 | 1/A1/1188:1197 | No text annotation | geometric HL_4V88_212 NA | |
| HL_4V7R_027 | 1/A1/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_4V7R_028 | 1/A1/1296:1301 | GNRA | geometric HL_6CZR_095 NA | |
| HL_4V7R_029 | 1/A1/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_4V7R_030 | 1/A1/1358:1365 | No text annotation | homologous HL_8C3A_221 NA | |
| HL_4V7R_231 | 1/A1/1396:1402 | GNRA | geometric HL_6AEG_001 NA | |
| HL_4V7R_032 | 1/A1/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_4V7R_033 | 1/A1/1550:1561 | No text annotation | homologous HL_8P9A_222 HL_67079.1 | |
| HL_4V7R_034 | 1/A1/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_4V7R_035 | 1/A1/1675:1726 | No text annotation | ||
| HL_4V7R_036 | 1/A1/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_4V7R_037 | 1/B1/38:45 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_4V7R_038 | 1/B1/69:74 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V7R_039 | 1/B1/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_4V7R_041 | 1/B1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_4V7R_042 | 1/B1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_4V7R_043 | 1/B1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_4V7R_044 | 1/B1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_4V7R_045 | 1/B1/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_4V7R_046 | 1/B1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_4V7R_047 | 1/B1/382:387 | No text annotation | ||
| HL_4V7R_048 | 1/B1/543:548 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_4V7R_049 | 1/B1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_4V7R_050 | 1/B1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_4V7R_051 | 1/B1/687:693 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_4V7R_052 | 1/B1/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_4V7R_053 | 1/B1/732:737 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V7R_054 | 1/B1/762:769 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_4V7R_055 | 1/B1/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_4V7R_056 | 1/B1/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_4V7R_057 | 1/B1/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_4V7R_058 | 1/B1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_4V7R_059 | 1/B1/1023:1029 | No text annotation | ||
| HL_4V7R_060 | 1/B1/1076:1083 | No text annotation | geometric HL_4V88_215 NA | |
| HL_4V7R_061 | 1/B1/1126:1132 | GNRA | homologous HL_5TBW_025 NA | |
| HL_4V7R_062 | 1/B1/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_4V7R_063 | 1/B1/1239:1249 | No text annotation | geometric HL_1GID_008 NA | |
| HL_4V7R_232 | 1/B1/1267:1274 | No text annotation | ||
| HL_4V7R_065 | 1/B1/1346:1358 | No text annotation | ||
| HL_4V7R_066 | 1/B1/1403:1408 | GNRA | homologous HL_5TBW_030 NA | |
| HL_4V7R_067 | 1/B1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_4V7R_068 | 1/B1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_4V7R_069 | 1/B1/1544:1549 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_4V7R_070 | 1/B1/1565:1574 | No text annotation | ||
| HL_4V7R_071 | 1/B1/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_4V7R_072 | 1/B1/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_4V7R_073 | 1/B1/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_4V7R_074 | 1/B1/1719:1725 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_4V7R_075 | 1/B1/1760:1765 | GNRA variation | geometric HL_5VSU_001 HL_37824.7 | |
| HL_4V7R_076 | 1/B1/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_4V7R_077 | 1/B1/1844:1851 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_4V7R_078 | 1/B1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_4V7R_079 | 1/B1/1923:1928 | UNCG | homologous HL_5TBW_043 NA | |
| HL_4V7R_081 | 1/B1/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_4V7R_082 | 1/B1/2135:2145 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_4V7R_083 | 1/B1/2164:2170 | GNRA | homologous HL_5TBW_047 NA | |
| HL_4V7R_084 | 1/B1/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_4V7R_085 | 1/B1/2253:2263 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_4V7R_086 | 1/B1/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_4V7R_087 | 1/B1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_4V7R_089 | 1/B1/2536:2543 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
| HL_4V7R_090 | 1/B1/2568:2573 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V7R_091 | 1/B1/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_4V7R_092 | 1/B1/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_4V7R_093 | 1/B1/2672:2682 | No text annotation | ||
| HL_4V7R_094 | 1/B1/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_4V7R_095 | 1/B1/2724:2732 | No text annotation | ||
| HL_4V7R_096 | 1/B1/2744:2749 | GNRA | homologous HL_5TBW_059 NA | |
| HL_4V7R_097 | 1/B1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_4V7R_098 | 1/B1/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_4V7R_238 | 1/B1/2897:2904 | No text annotation | homologous HL_8P9A_173 HL_31585.4 | |
| HL_4V7R_100 | 1/B1/2920:2926 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_4V7R_101 | 1/B1/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_4V7R_102 | 1/B1/3025:3030 | GNRA | homologous HL_5TBW_065 NA | |
| HL_4V7R_103 | 1/B1/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_4V7R_104 | 1/B1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_4V7R_105 | 1/B1/3193:3199 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V7R_106 | 1/B1/3240:3247 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4V7R_107 | 1/B1/3303:3311 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_4V7R_233 | 1/B1/3348:3357 | No text annotation | ||
| HL_4V7R_109 | 1/B2/28:52 | No text annotation | ||
| HL_4V7R_110 | 1/B2/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_4V7R_111 | 1/B3/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_4V7R_112 | 1/B3/68:91 | No text annotation | ||
| HL_4V7R_113 | 1/B3/109:113 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_4V7R_114 | 1/B3/124:129 | No text annotation | ||
| HL_4V7R_115 | 1/C1/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_4V7R_234 | 1/C1/71:82 | No text annotation | ||
| HL_4V7R_117 | 1/C1/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_4V7R_118 | 1/C1/190:195 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V7R_119 | 1/C1/230:235 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_4V7R_120 | 1/C1/275:281 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V7R_121 | 1/C1/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_4V7R_122 | 1/C1/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_4V7R_123 | 1/C1/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_4V7R_124 | 1/C1/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_4V7R_125 | 1/C1/450:456 | No text annotation | ||
| HL_4V7R_126 | 1/C1/491:496 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_4V7R_127 | 1/C1/523:530 | No text annotation | ||
| HL_4V7R_128 | 1/C1/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_4V7R_130 | 1/C1/715:723 | No text annotation | homologous HL_8P9A_235 HL_20535.2 | |
| HL_4V7R_131 | 1/C1/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_4V7R_132 | 1/C1/777:783 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_4V7R_133 | 1/C1/827:845 | No text annotation | homologous HL_8P9A_208 NA | |
| HL_4V7R_134 | 1/C1/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_4V7R_135 | 1/C1/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_4V7R_136 | 1/C1/997:1007 | No text annotation | geometric HL_4V88_208 NA | |
| HL_4V7R_235 | 1/C1/1054:1065 | No text annotation | ||
| HL_4V7R_137 | 1/C1/1055:1064 | No text annotation | ||
| HL_4V7R_138 | 1/C1/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_4V7R_139 | 1/C1/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_4V7R_140 | 1/C1/1188:1197 | No text annotation | geometric HL_4V88_212 NA | |
| HL_4V7R_141 | 1/C1/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_4V7R_142 | 1/C1/1296:1301 | GNRA | geometric HL_6CZR_095 NA | |
| HL_4V7R_143 | 1/C1/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_4V7R_144 | 1/C1/1358:1365 | No text annotation | homologous HL_8C3A_221 NA | |
| HL_4V7R_236 | 1/C1/1396:1402 | GNRA | geometric HL_5TBW_059 NA | |
| HL_4V7R_146 | 1/C1/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_4V7R_147 | 1/C1/1550:1561 | No text annotation | homologous HL_8P9A_222 HL_67079.1 | |
| HL_4V7R_148 | 1/C1/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_4V7R_149 | 1/C1/1675:1726 | No text annotation | ||
| HL_4V7R_150 | 1/C1/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_4V7R_151 | 1/D1/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_4V7R_152 | 1/D1/69:74 | No text annotation | ||
| HL_4V7R_153 | 1/D1/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_4V7R_154 | 1/D1/132:136 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V7R_155 | 1/D1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_4V7R_156 | 1/D1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_4V7R_157 | 1/D1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_4V7R_158 | 1/D1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_4V7R_159 | 1/D1/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_4V7R_160 | 1/D1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_4V7R_161 | 1/D1/382:387 | No text annotation | ||
| HL_4V7R_162 | 1/D1/543:548 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_4V7R_163 | 1/D1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_4V7R_164 | 1/D1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_4V7R_165 | 1/D1/687:693 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_4V7R_166 | 1/D1/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_4V7R_167 | 1/D1/732:737 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V7R_168 | 1/D1/762:769 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_4V7R_169 | 1/D1/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_4V7R_170 | 1/D1/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_4V7R_171 | 1/D1/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_4V7R_172 | 1/D1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_4V7R_173 | 1/D1/1023:1029 | No text annotation | ||
| HL_4V7R_174 | 1/D1/1076:1083 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_4V7R_175 | 1/D1/1126:1132 | GNRA | homologous HL_5TBW_025 NA | |
| HL_4V7R_176 | 1/D1/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_4V7R_177 | 1/D1/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_4V7R_178 | 1/D1/1267:1274 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V7R_179 | 1/D1/1346:1358 | No text annotation | ||
| HL_4V7R_180 | 1/D1/1403:1408 | GNRA | homologous HL_5TBW_030 NA | |
| HL_4V7R_181 | 1/D1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_4V7R_182 | 1/D1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_4V7R_183 | 1/D1/1544:1549 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_4V7R_184 | 1/D1/1565:1574 | No text annotation | ||
| HL_4V7R_185 | 1/D1/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_4V7R_186 | 1/D1/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_4V7R_187 | 1/D1/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_4V7R_188 | 1/D1/1719:1725 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_4V7R_189 | 1/D1/1760:1765 | GNRA variation | geometric HL_5VSU_001 HL_37824.7 | |
| HL_4V7R_190 | 1/D1/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_4V7R_191 | 1/D1/1844:1851 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_4V7R_192 | 1/D1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_4V7R_193 | 1/D1/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_4V7R_195 | 1/D1/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_4V7R_196 | 1/D1/2135:2145 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_4V7R_197 | 1/D1/2164:2170 | GNRA | homologous HL_5TBW_047 NA | |
| HL_4V7R_198 | 1/D1/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_4V7R_199 | 1/D1/2253:2263 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_4V7R_200 | 1/D1/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_4V7R_201 | 1/D1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_4V7R_202 | 1/D1/2470:2475 | No text annotation | ||
| HL_4V7R_203 | 1/D1/2536:2543 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
| HL_4V7R_204 | 1/D1/2568:2573 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V7R_205 | 1/D1/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_4V7R_206 | 1/D1/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_4V7R_207 | 1/D1/2672:2682 | No text annotation | ||
| HL_4V7R_208 | 1/D1/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_4V7R_209 | 1/D1/2724:2732 | No text annotation | ||
| HL_4V7R_210 | 1/D1/2744:2749 | GNRA | homologous HL_5TBW_059 NA | |
| HL_4V7R_211 | 1/D1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_4V7R_212 | 1/D1/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_4V7R_239 | 1/D1/2897:2904 | No text annotation | homologous HL_8P9A_173 HL_31585.4 | |
| HL_4V7R_214 | 1/D1/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_4V7R_215 | 1/D1/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_4V7R_216 | 1/D1/3025:3030 | GNRA | homologous HL_5TBW_065 NA | |
| HL_4V7R_217 | 1/D1/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_4V7R_218 | 1/D1/3110:3124 | No text annotation | homologous HL_5TBW_067 NA | |
| HL_4V7R_219 | 1/D1/3193:3199 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V7R_220 | 1/D1/3240:3247 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_4V7R_221 | 1/D1/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_4V7R_237 | 1/D1/3348:3357 | No text annotation | ||
| HL_4V7R_223 | 1/D2/28:52 | No text annotation | ||
| HL_4V7R_224 | 1/D2/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_4V7R_225 | 1/D3/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_4V7R_226 | 1/D3/68:91 | No text annotation | ||
| HL_4V7R_227 | 1/D3/109:113 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_4V7R_228 | 1/D3/124:129 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V7R_002 | No text annotation | ||
| HL_4V7R_015 | No text annotation | ||
| HL_4V7R_031 | tRNA anticodon loop | ||
| HL_4V7R_040 | Externally structured | ||
| HL_4V7R_064 | No text annotation | ||
| HL_4V7R_080 | No text annotation | ||
| HL_4V7R_088 | No text annotation | ||
| HL_4V7R_099 | No text annotation | ||
| HL_4V7R_108 | No text annotation | ||
| HL_4V7R_116 | No text annotation | ||
| HL_4V7R_129 | No text annotation | ||
| HL_4V7R_145 | tRNA anticodon loop | ||
| HL_4V7R_194 | No text annotation | ||
| HL_4V7R_213 | No text annotation | ||
| HL_4V7R_222 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V7R_001 | 1/A1/24:27, 1/A1/599:601 | Isolated non-canonical cWW pair | geometric IL_8FEQ_001 IL_28037.2 | |
| IL_4V7R_003 | 1/A1/35:37, 1/A1/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_4V7R_004 | 1/A1/37:41, 1/A1/466:471 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_4V7R_005 | 1/A1/42:48, 1/A1/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_4V7R_006 | 1/A1/50:52, 1/A1/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_4V7R_007 | 1/A1/57:62, 1/A1/88:90 | No text annotation | ||
| IL_4V7R_008 | 1/A1/64:70, 1/A1/83:86 | No text annotation | ||
| IL_4V7R_009 | 1/A1/109:112, 1/A1/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_4V7R_010 | 1/A1/113:116, 1/A1/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_4V7R_011 | 1/A1/117:122, 1/A1/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_4V7R_012 | 1/A1/143:149, 1/A1/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_4V7R_013 | 1/A1/150:152, 1/A1/162:164 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_4V7R_014 | 1/A1/185:189, 1/A1/196:200 | Triple sheared | geometric IL_1U6B_002 IL_17948.2 | |
| IL_4V7R_015 | 1/A1/204:206, 1/A1/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_4V7R_016 | 1/A1/206:208, 1/A1/257:259 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_4V7R_505 | 1/A1/213:228, 1/A1/237:252 | No text annotation | ||
| IL_4V7R_017 | 1/A1/270:272, 1/A1/284:285 | No text annotation | ||
| IL_4V7R_018 | 1/A1/311:316, 1/A1/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_4V7R_019 | 1/A1/318:323, 1/A1/345:346 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_4V7R_020 | 1/A1/364:365, 1/A1/376:380 | No text annotation | ||
| IL_4V7R_021 | 1/A1/389:391, 1/A1/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_4V7R_022 | 1/A1/411:413, 1/A1/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_4V7R_023 | 1/A1/439:441, 1/A1/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_4V7R_024 | 1/A1/443:447, 1/A1/460:461 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_4V7R_025 | 1/A1/447:448, 1/A1/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_4V7R_027 | 1/A1/482:483, 1/A1/504:506 | Single bulged A | geometric IL_5WWT_001 IL_31462.6 | |
| IL_4V7R_030 | 1/A1/517:520, 1/A1/532:535 | No text annotation | ||
| IL_4V7R_031 | 1/A1/520:523, 1/A1/530:532 | No text annotation | ||
| IL_4V7R_032 | 1/A1/550:559, 1/A1/586:588 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_4V7R_033 | 1/A1/562:568, 1/A1/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_4V7R_034 | 1/A1/624:626, 1/A1/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_4V7R_035 | 1/A1/627:631, 1/A1/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_4V7R_037 | 1/A1/646:648, 1/A1/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_4V7R_535 | 1/A1/701:712, 1/A1/726:737 | No text annotation | ||
| IL_4V7R_039 | 1/A1/746:747, 1/A1/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_4V7R_040 | 1/A1/748:750, 1/A1/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_4V7R_041 | 1/A1/751:759, 1/A1/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_4V7R_042 | 1/A1/821:827, 1/A1/845:850 | No text annotation | ||
| IL_4V7R_043 | 1/A1/865:866, 1/A1/962:965 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_4V7R_044 | 1/A1/868:869, 1/A1/958:960 | No text annotation | ||
| IL_4V7R_045 | 1/A1/871:874, 1/A1/953:956 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_4V7R_046 | 1/A1/874:878, 1/A1/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_4V7R_047 | 1/A1/885:888, 1/A1/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_4V7R_048 | 1/A1/893:899, 1/A1/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_4V7R_049 | 1/A1/985:990, 1/A1/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_4V7R_050 | 1/A1/990:994, 1/A1/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_4V7R_052 | 1/A1/1034:1036, 1/A1/1095:1101 | Isolated cWH basepair | geometric IL_2W2H_002 NA | |
| IL_4V7R_053 | 1/A1/1042:1045, 1/A1/1073:1077 | No text annotation | ||
| IL_4V7R_054 | 1/A1/1051:1053, 1/A1/1066:1067 | Multiple bulged bases | geometric IL_5J7L_005 IL_82107.4 | |
| IL_4V7R_055 | 1/A1/1111:1118, 1/A1/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_4V7R_056 | 1/A1/1145:1147, 1/A1/1630:1633 | No text annotation | ||
| IL_4V7R_057 | 1/A1/1148:1151, 1/A1/1627:1629 | No text annotation | ||
| IL_4V7R_058 | 1/A1/1157:1160, 1/A1/1617:1621 | No text annotation | ||
| IL_4V7R_059 | 1/A1/1173:1175, 1/A1/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_4V7R_060 | 1/A1/1178:1179, 1/A1/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_4V7R_061 | 1/A1/1213:1215, 1/A1/1448:1450 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
| IL_4V7R_062 | 1/A1/1224:1233, 1/A1/1252:1259 | No text annotation | ||
| IL_4V7R_063 | 1/A1/1234:1236, 1/A1/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_4V7R_064 | 1/A1/1268:1270, 1/A1/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_4V7R_065 | 1/A1/1272:1275, 1/A1/1437:1438 | Multiple bulged bases | geometric IL_1FUF_002 IL_82107.4 | |
| IL_4V7R_066 | 1/A1/1276:1278, 1/A1/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_4V7R_067 | 1/A1/1280:1281, 1/A1/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_4V7R_068 | 1/A1/1290:1292, 1/A1/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_4V7R_070 | 1/A1/1340:1342, 1/A1/1383:1384 | Single bulged A | geometric IL_5TBW_113 NA | |
| IL_4V7R_071 | 1/A1/1344:1348, 1/A1/1377:1381 | No text annotation | ||
| IL_4V7R_073 | 1/A1/1352:1354, 1/A1/1369:1373 | No text annotation | ||
| IL_4V7R_075 | 1/A1/1389:1391, 1/A1/1407:1412 | Major groove platform; stack outside cWW | homologous IL_4V88_458 NA | |
| IL_4V7R_510 | 1/A1/1480:1486, 1/A1/1520:1527 | No text annotation | ||
| IL_4V7R_077 | 1/A1/1488:1494, 1/A1/1513:1518 | No text annotation | ||
| IL_4V7R_078 | 1/A1/1495:1498, 1/A1/1509:1512 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_4V7R_080 | 1/A1/1540:1545, 1/A1/1566:1571 | No text annotation | homologous IL_4V88_462 NA | |
| IL_4V7R_081 | 1/A1/1636:1638, 1/A1/1764:1767 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4V7R_082 | 1/A1/1638:1641, 1/A1/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_4V7R_083 | 1/A1/1642:1644, 1/A1/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_4V7R_084 | 1/A1/1644:1647, 1/A1/1753:1757 | Non canonical cWW and near pair | homologous IL_4V88_466 NA | |
| IL_4V7R_085 | 1/A1/1650:1652, 1/A1/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_4V7R_086 | 1/A1/1653:1656, 1/A1/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_4V7R_087 | 1/A1/1656:1658, 1/A1/1743:1744 | No text annotation | ||
| IL_4V7R_088 | 1/A1/1665:1667, 1/A1/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_4V7R_089 | 1/A1/1669:1672, 1/A1/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_4V7R_090 | 1/A1/1672:1674, 1/A1/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_4V7R_536 | 1/B1/5:10, 1/B3/148:154 | No text annotation | ||
| IL_4V7R_092 | 1/B1/12:16, 1/B3/143:146 | No text annotation | ||
| IL_4V7R_094 | 1/B1/27:28, 1/B1/56:58 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_4V7R_095 | 1/B1/32:38, 1/B1/45:52 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_04346.10 | |
| IL_4V7R_096 | 1/B1/82:89, 1/B1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_4V7R_097 | 1/B1/117:122, 1/B1/146:151 | No text annotation | ||
| IL_4V7R_098 | 1/B1/122:124, 1/B1/144:146 | Self complementary | geometric IL_2D6F_001 NA | |
| IL_4V7R_099 | 1/B1/125:127, 1/B1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_4V7R_100 | 1/B1/164:166, 1/B1/256:257 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_4V7R_101 | 1/B1/169:171, 1/B1/247:253 | No text annotation | ||
| IL_4V7R_103 | 1/B1/176:178, 1/B1/238:242 | No text annotation | ||
| IL_4V7R_104 | 1/B1/189:191, 1/B1/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_4V7R_107 | 1/B1/337:339, 1/B3/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_4V7R_108 | 1/B1/376:379, 1/B1/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_4V7R_110 | 1/B1/404:410, 1/B3/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_4V7R_112 | 1/B1/429:431, 1/B1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_4V7R_113 | 1/B1/435:437, 1/B1/623:624 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_4V7R_115 | 1/B1/505:506, 1/B1/584:586 | Single stack bend | geometric IL_7RQB_005 NA | |
| IL_4V7R_116 | 1/B1/508:510, 1/B1/580:582 | Self complementary | geometric IL_364D_004 NA | |
| IL_4V7R_511 | 1/B1/508:513, 1/B1/577:582 | No text annotation | ||
| IL_4V7R_117 | 1/B1/510:514, 1/B1/576:580 | No text annotation | geometric IL_4DB2_001 IL_68909.1 | |
| IL_4V7R_118 | 1/B1/517:525, 1/B1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_4V7R_512 | 1/B1/531:536, 1/B1/557:561 | No text annotation | ||
| IL_4V7R_121 | 1/B1/536:539, 1/B1/552:557 | No text annotation | ||
| IL_4V7R_122 | 1/B1/668:670, 1/B1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_4V7R_123 | 1/B1/681:684, 1/B1/696:699 | No text annotation | ||
| IL_4V7R_125 | 1/B1/725:729, 1/B1/740:745 | No text annotation | ||
| IL_4V7R_126 | 1/B1/752:753, 1/B1/779:781 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_4V7R_128 | 1/B1/755:756, 1/B1/775:777 | Single stack bend | geometric IL_5VSU_003 IL_26793.1 | |
| IL_4V7R_129 | 1/B1/757:762, 1/B1/769:774 | No text annotation | ||
| IL_4V7R_130 | 1/B1/803:805, 1/B1/938:940 | Isolated non-canonical cWW pair | homologous IL_5TBW_027 NA | |
| IL_4V7R_131 | 1/B1/805:809, 1/B1/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_4V7R_133 | 1/B1/833:834, 1/B1/859:861 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_4V7R_134 | 1/B1/834:838, 1/B1/855:859 | Triple sheared | homologous IL_5TBW_030 NA | |
| IL_4V7R_135 | 1/B1/869:872, 1/B1/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_4V7R_136 | 1/B1/873:875, 1/B1/886:887 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_4V7R_137 | 1/B1/907:909, 1/B1/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_4V7R_138 | 1/B1/954:956, 1/B1/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_4V7R_139 | 1/B1/969:970, 1/B1/1111:1113 | Single stack bend | homologous IL_5TBW_035 NA | |
| IL_4V7R_140 | 1/B1/976:981, 1/B1/1102:1105 | No text annotation | ||
| IL_4V7R_141 | 1/B1/983:985, 1/B1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_4V7R_142 | 1/B1/991:997, 1/B1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_4V7R_143 | 1/B1/997:998, 1/B1/1050:1052 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_4V7R_537 | 1/B1/999:1004, 1/B1/1046:1049 | No text annotation | homologous IL_8P9A_268 IL_26222.2 | |
| IL_4V7R_145 | 1/B1/1006:1009, 1/B1/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_3R2D_002 IL_77658.1 | |
| IL_4V7R_146 | 1/B1/1009:1012, 1/B1/1038:1041 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_4V7R_147 | 1/B1/1013:1015, 1/B1/1036:1037 | Single bulged U | geometric IL_4WF9_038 IL_89505.4 | |
| IL_4V7R_148 | 1/B1/1015:1017, 1/B1/1035:1036 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_4V7R_151 | 1/B1/1069:1071, 1/B1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_4V7R_513 | 1/B1/1074:1076, 1/B1/1083:1084 | Single bulged A | geometric IL_5J7L_064 IL_31462.6 | |
| IL_4V7R_153 | 1/B1/1120:1122, 1/B1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_4V7R_154 | 1/B1/1167:1171, 1/B1/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_4V7R_155 | 1/B1/1173:1180, 1/B1/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_4V7R_156 | 1/B1/1180:1182, 1/B1/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_4V7R_157 | 1/B1/1187:1205, 1/B1/1299:1319 | No text annotation | ||
| IL_4V7R_158 | 1/B1/1207:1209, 1/B1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_4V7R_160 | 1/B1/1218:1226, 1/B1/1283:1287 | No text annotation | ||
| IL_4V7R_161 | 1/B1/1234:1238, 1/B1/1250:1254 | No text annotation | ||
| IL_4V7R_162 | 1/B1/1262:1266, 1/B1/1275:1277 | No text annotation | ||
| IL_4V7R_163 | 1/B1/1376:1378, 1/B1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_4V7R_164 | 1/B1/1385:1387, 1/B1/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_4V7R_538 | 1/B1/1388:1395, 1/B1/1415:1419 | Kink-turn | homologous IL_8P9A_287 IL_70923.9 | |
| IL_4V7R_166 | 1/B1/1398:1400, 1/B1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_4V7R_167 | 1/B1/1444:1451, 1/B1/2353:2359 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | geometric IL_4V9F_012 IL_59724.1 | |
| IL_4V7R_168 | 1/B1/1492:1495, 1/B1/1835:1836 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
| IL_4V7R_169 | 1/B1/1501:1505, 1/B1/1513:1515 | C-loop | geometric IL_7RQB_051 NA | |
| IL_4V7R_170 | 1/B1/1532:1536, 1/B1/1585:1590 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_4V7R_171 | 1/B1/1618:1620, 1/B1/1825:1826 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_4V7R_173 | 1/B1/1625:1628, 1/B1/1817:1820 | No text annotation | ||
| IL_4V7R_174 | 1/B1/1628:1631, 1/B1/1811:1817 | No text annotation | ||
| IL_4V7R_175 | 1/B1/1645:1649, 1/B1/1806:1810 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_4V7R_176 | 1/B1/1661:1663, 1/B1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_4V7R_177 | 1/B1/1669:1670, 1/B1/1778:1780 | No text annotation | ||
| IL_4V7R_178 | 1/B1/1670:1671, 1/B1/1776:1778 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_4V7R_514 | 1/B1/1695:1698, 1/B1/1747:1751 | No text annotation | geometric IL_5J7L_299 IL_68574.4 | |
| IL_4V7R_180 | 1/B1/1702:1707, 1/B1/1737:1743 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_4V7R_181 | 1/B1/1711:1717, 1/B1/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_4V7R_182 | 1/B1/1883:1889, 1/B1/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_4V7R_183 | 1/B1/1895:1897, 1/B1/2338:2340 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_4V7R_184 | 1/B1/1898:1901, 1/B1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_4V7R_515 | 1/B1/1898:1906, 1/B1/2333:2337 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_4V7R_185 | 1/B1/1901:1906, 1/B1/2333:2336 | Intercalated tWH | homologous IL_5TBW_077 NA | |
| IL_4V7R_186 | 1/B1/1918:1923, 1/B1/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_4V7R_187 | 1/B1/1940:1942, 1/B1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_4V7R_188 | 1/B1/1947:1948, 1/B1/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_4V7R_190 | 1/B1/2128:2129, 1/B1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_4V7R_191 | 1/B1/2156:2161, 1/B1/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_4V7R_192 | 1/B1/2196:2199, 1/B1/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_4V7R_193 | 1/B1/2200:2201, 1/B1/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_4V7R_194 | 1/B1/2204:2206, 1/B1/2237:2238 | No text annotation | ||
| IL_4V7R_195 | 1/B1/2206:2210, 1/B1/2235:2237 | No text annotation | ||
| IL_4V7R_196 | 1/B1/2211:2217, 1/B1/2228:2234 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_4V7R_197 | 1/B1/2250:2251, 1/B1/2265:2267 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_4V7R_198 | 1/B1/2276:2277, 1/B1/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_4V7R_199 | 1/B1/2277:2288, 1/B1/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_4V7R_200 | 1/B1/2391:2394, 1/B1/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_4V7R_201 | 1/B1/2396:2398, 1/B1/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_4V7R_202 | 1/B1/2409:2411, 1/B1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_4V7R_203 | 1/B1/2412:2413, 1/B1/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_4V7R_516 | 1/B1/2423:2425, 1/B1/2604:2607 | No text annotation | homologous IL_8P9A_323 IL_85599.2 | |
| IL_4V7R_207 | 1/B1/2444:2447, 1/B1/2499:2503 | No text annotation | ||
| IL_4V7R_208 | 1/B1/2450:2462, 1/B1/2493:2496 | No text annotation | ||
| IL_4V7R_209 | 1/B1/2466:2469, 1/B1/2476:2489 | No text annotation | ||
| IL_4V7R_210 | 1/B1/2520:2526, 1/B1/2584:2587 | No text annotation | ||
| IL_4V7R_211 | 1/B1/2614:2615, 1/B1/2625:2627 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_4V7R_212 | 1/B1/2666:2668, 1/B1/2686:2690 | No text annotation | ||
| IL_4V7R_213 | 1/B1/2718:2721, 1/B1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_4V7R_214 | 1/B1/2770:2773, 1/B1/2787:2788 | Single stack bend with bulge | homologous IL_5TBW_101 NA | |
| IL_4V7R_215 | 1/B1/2823:2824, 1/B1/2865:2867 | Major groove platform | geometric IL_7A0S_073 IL_48076.6 | |
| IL_4V7R_216 | 1/B1/2824:2826, 1/B1/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_021 NA | |
| IL_4V7R_217 | 1/B1/2826:2828, 1/B1/2862:2863 | Major groove platform | homologous IL_5TBW_104 NA | |
| IL_4V7R_517 | 1/B1/2826:2830, 1/B1/2858:2863 | No text annotation | ||
| IL_4V7R_218 | 1/B1/2828:2830, 1/B1/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_4V7R_220 | 1/B1/2835:2839, 1/B1/2849:2853 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_4V7R_221 | 1/B1/2876:2877, 1/B1/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_4V7R_222 | 1/B1/2879:2881, 1/B1/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_4V7R_223 | 1/B1/2881:2882, 1/B1/2940:2943 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_4V7R_224 | 1/B1/2889:2891, 1/B1/2912:2914 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_4V7R_225 | 1/B1/2891:2892, 1/B1/2909:2912 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_4V7R_226 | 1/B1/2918:2920, 1/B1/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_4V7R_227 | 1/B1/2960:2961, 1/B1/2970:2972 | Single bulged A | geometric IL_2VPL_002 IL_31462.6 | |
| IL_4V7R_228 | 1/B1/3003:3007, 1/B1/3139:3145 | No text annotation | ||
| IL_4V7R_518 | 1/B1/3019:3025, 1/B1/3030:3035 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_4V9F_092 IL_26307.2 | |
| IL_4V7R_230 | 1/B1/3047:3051, 1/B1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_4V7R_231 | 1/B1/3054:3059, 1/B1/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_4V7R_232 | 1/B1/3063:3064, 1/B1/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_4V7R_233 | 1/B1/3103:3107, 1/B1/3127:3131 | UAA/GAN | homologous IL_5TBW_120 NA | |
| IL_4V7R_235 | 1/B1/3164:3166, 1/B1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_4V7R_236 | 1/B1/3168:3170, 1/B1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_4V7R_237 | 1/B1/3177:3179, 1/B1/3209:3211 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_4V7R_539 | 1/B1/3179:3189, 1/B1/3203:3209 | No text annotation | ||
| IL_4V7R_240 | 1/B1/3227:3230, 1/B1/3257:3258 | No text annotation | ||
| IL_4V7R_241 | 1/B1/3233:3235, 1/B1/3252:3254 | Isolated non-canonical cWW pair | homologous IL_5TBW_127 NA | |
| IL_4V7R_242 | 1/B1/3235:3238, 1/B1/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_4V7R_243 | 1/B1/3296:3297, 1/B1/3391:3393 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
| IL_4V7R_244 | 1/B1/3300:3303, 1/B1/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_4V7R_246 | 1/B1/3324:3325, 1/B1/3380:3383 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_4V7R_247 | 1/B1/3327:3330, 1/B1/3373:3378 | No text annotation | ||
| IL_4V7R_248 | 1/B1/3331:3336, 1/B1/3368:3372 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_4V7R_249 | 1/B1/3340:3345, 1/B1/3360:3364 | No text annotation | ||
| IL_4V7R_250 | 1/B2/15:16, 1/B2/63:65 | Multiple bulged bases | geometric IL_3R2D_001 IL_84476.1 | |
| IL_4V7R_251 | 1/B2/21:27, 1/B2/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_4V7R_252 | 1/B2/72:80, 1/B2/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_369 IL_04346.10 | |
| IL_4V7R_253 | 1/B2/84:87, 1/B2/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_4V7R_254 | 1/B3/64:67, 1/B3/92:96 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_4V7R_255 | 1/C1/24:27, 1/C1/599:601 | Isolated non-canonical cWW pair | geometric IL_8FEQ_001 IL_28037.2 | |
| IL_4V7R_257 | 1/C1/35:37, 1/C1/471:473 | Isolated non-canonical cWW pair | geometric IL_2O3Y_001 IL_28037.2 | |
| IL_4V7R_258 | 1/C1/37:41, 1/C1/466:471 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_4V7R_259 | 1/C1/42:48, 1/C1/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_4V7R_260 | 1/C1/50:52, 1/C1/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_4V7R_261 | 1/C1/57:62, 1/C1/88:90 | No text annotation | ||
| IL_4V7R_262 | 1/C1/64:70, 1/C1/83:86 | No text annotation | ||
| IL_4V7R_263 | 1/C1/109:112, 1/C1/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_4V7R_264 | 1/C1/113:116, 1/C1/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_4V7R_265 | 1/C1/117:122, 1/C1/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_4V7R_266 | 1/C1/143:149, 1/C1/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_4V7R_267 | 1/C1/150:152, 1/C1/162:164 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_4V7R_268 | 1/C1/185:189, 1/C1/196:200 | Triple sheared | geometric IL_1U6B_002 IL_17948.2 | |
| IL_4V7R_269 | 1/C1/206:208, 1/C1/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_4V7R_520 | 1/C1/213:228, 1/C1/237:252 | No text annotation | ||
| IL_4V7R_270 | 1/C1/270:272, 1/C1/284:285 | No text annotation | ||
| IL_4V7R_271 | 1/C1/311:316, 1/C1/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_4V7R_272 | 1/C1/318:323, 1/C1/345:346 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_4V7R_273 | 1/C1/364:365, 1/C1/376:380 | No text annotation | ||
| IL_4V7R_274 | 1/C1/389:391, 1/C1/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_4V7R_275 | 1/C1/411:413, 1/C1/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_4V7R_276 | 1/C1/439:441, 1/C1/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_4V7R_277 | 1/C1/443:447, 1/C1/460:461 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_4V7R_278 | 1/C1/447:448, 1/C1/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_4V7R_280 | 1/C1/482:483, 1/C1/504:506 | Single bulged A | geometric IL_5WWT_001 IL_31462.6 | |
| IL_4V7R_283 | 1/C1/517:520, 1/C1/532:535 | No text annotation | ||
| IL_4V7R_284 | 1/C1/520:523, 1/C1/530:532 | No text annotation | ||
| IL_4V7R_285 | 1/C1/550:559, 1/C1/586:588 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_4V7R_286 | 1/C1/562:568, 1/C1/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_4V7R_287 | 1/C1/624:626, 1/C1/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_4V7R_288 | 1/C1/627:631, 1/C1/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_4V7R_290 | 1/C1/646:648, 1/C1/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_4V7R_523 | 1/C1/648:650, 1/C1/685:686 | No text annotation | geometric IL_8C3A_038 NA | |
| IL_4V7R_292 | 1/C1/703:708, 1/C1/730:735 | Triple sheared related | geometric IL_4V88_421 NA | |
| IL_4V7R_293 | 1/C1/708:712, 1/C1/726:730 | No text annotation | homologous IL_4V88_422 NA | |
| IL_4V7R_294 | 1/C1/746:747, 1/C1/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_4V7R_295 | 1/C1/748:750, 1/C1/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_4V7R_296 | 1/C1/751:759, 1/C1/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_4V7R_297 | 1/C1/821:827, 1/C1/845:850 | No text annotation | ||
| IL_4V7R_298 | 1/C1/865:866, 1/C1/962:965 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_4V7R_299 | 1/C1/868:869, 1/C1/958:960 | No text annotation | ||
| IL_4V7R_300 | 1/C1/871:874, 1/C1/953:956 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_4V7R_301 | 1/C1/874:878, 1/C1/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_4V7R_302 | 1/C1/885:888, 1/C1/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_4V7R_303 | 1/C1/893:899, 1/C1/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_4V7R_304 | 1/C1/985:990, 1/C1/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_4V7R_305 | 1/C1/990:994, 1/C1/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_4V7R_307 | 1/C1/1034:1036, 1/C1/1095:1101 | Isolated cWH basepair | geometric IL_2W2H_002 NA | |
| IL_4V7R_308 | 1/C1/1042:1045, 1/C1/1073:1077 | No text annotation | ||
| IL_4V7R_309 | 1/C1/1051:1053, 1/C1/1066:1067 | Multiple bulged bases | geometric IL_5J7L_005 IL_82107.4 | |
| IL_4V7R_310 | 1/C1/1111:1118, 1/C1/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_4V7R_311 | 1/C1/1145:1147, 1/C1/1630:1633 | No text annotation | ||
| IL_4V7R_312 | 1/C1/1148:1151, 1/C1/1627:1629 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_4V7R_313 | 1/C1/1157:1160, 1/C1/1617:1621 | No text annotation | ||
| IL_4V7R_314 | 1/C1/1173:1175, 1/C1/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_4V7R_315 | 1/C1/1178:1179, 1/C1/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_4V7R_316 | 1/C1/1213:1215, 1/C1/1448:1450 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_4V7R_317 | 1/C1/1224:1233, 1/C1/1252:1259 | No text annotation | ||
| IL_4V7R_318 | 1/C1/1234:1236, 1/C1/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_4V7R_319 | 1/C1/1268:1270, 1/C1/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_4V7R_320 | 1/C1/1272:1275, 1/C1/1437:1438 | Multiple bulged bases | geometric IL_1FUF_002 IL_82107.4 | |
| IL_4V7R_321 | 1/C1/1276:1278, 1/C1/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_4V7R_322 | 1/C1/1280:1281, 1/C1/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_4V7R_323 | 1/C1/1290:1292, 1/C1/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_4V7R_325 | 1/C1/1340:1342, 1/C1/1383:1384 | Single bulged A | geometric IL_5TBW_113 NA | |
| IL_4V7R_326 | 1/C1/1344:1348, 1/C1/1377:1381 | No text annotation | ||
| IL_4V7R_328 | 1/C1/1352:1354, 1/C1/1369:1373 | No text annotation | ||
| IL_4V7R_330 | 1/C1/1389:1391, 1/C1/1407:1412 | Major groove platform; stack outside cWW | homologous IL_4V88_458 NA | |
| IL_4V7R_540 | 1/C1/1480:1486, 1/C1/1520:1527 | No text annotation | ||
| IL_4V7R_332 | 1/C1/1488:1494, 1/C1/1513:1518 | No text annotation | ||
| IL_4V7R_333 | 1/C1/1495:1498, 1/C1/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_4V7R_335 | 1/C1/1540:1545, 1/C1/1566:1571 | No text annotation | homologous IL_4V88_462 NA | |
| IL_4V7R_336 | 1/C1/1636:1638, 1/C1/1764:1767 | No text annotation | homologous IL_4V88_463 NA | |
| IL_4V7R_337 | 1/C1/1638:1641, 1/C1/1760:1764 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V7R_338 | 1/C1/1642:1644, 1/C1/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_4V7R_339 | 1/C1/1644:1647, 1/C1/1753:1757 | Non canonical cWW and near pair | geometric IL_4V88_466 NA | |
| IL_4V7R_340 | 1/C1/1650:1652, 1/C1/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_4V7R_341 | 1/C1/1653:1656, 1/C1/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_4V7R_342 | 1/C1/1656:1658, 1/C1/1743:1744 | No text annotation | ||
| IL_4V7R_343 | 1/C1/1665:1667, 1/C1/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_4V7R_344 | 1/C1/1669:1672, 1/C1/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_4V7R_345 | 1/C1/1672:1674, 1/C1/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_4V7R_346 | 1/D1/12:16, 1/D3/143:146 | No text annotation | ||
| IL_4V7R_348 | 1/D1/27:28, 1/D1/56:58 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_4V7R_349 | 1/D1/32:38, 1/D1/45:52 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_04346.10 | |
| IL_4V7R_350 | 1/D1/82:89, 1/D1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_4V7R_351 | 1/D1/117:122, 1/D1/146:151 | No text annotation | ||
| IL_4V7R_352 | 1/D1/122:124, 1/D1/144:146 | Self complementary | geometric IL_2D6F_001 NA | |
| IL_4V7R_353 | 1/D1/125:127, 1/D1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_4V7R_354 | 1/D1/164:166, 1/D1/256:257 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_4V7R_355 | 1/D1/169:171, 1/D1/247:253 | No text annotation | ||
| IL_4V7R_357 | 1/D1/176:178, 1/D1/238:242 | No text annotation | ||
| IL_4V7R_358 | 1/D1/189:191, 1/D1/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_4V7R_360 | 1/D1/337:339, 1/D3/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_4V7R_361 | 1/D1/376:379, 1/D1/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_4V7R_363 | 1/D1/404:410, 1/D3/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_4V7R_365 | 1/D1/429:431, 1/D1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_4V7R_366 | 1/D1/435:437, 1/D1/623:624 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_4V7R_368 | 1/D1/508:510, 1/D1/580:582 | Self complementary | geometric IL_364D_004 NA | |
| IL_4V7R_526 | 1/D1/510:513, 1/D1/577:580 | No text annotation | ||
| IL_4V7R_370 | 1/D1/517:525, 1/D1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_4V7R_527 | 1/D1/531:536, 1/D1/557:561 | No text annotation | ||
| IL_4V7R_373 | 1/D1/536:539, 1/D1/552:557 | No text annotation | ||
| IL_4V7R_374 | 1/D1/668:670, 1/D1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_4V7R_375 | 1/D1/681:684, 1/D1/696:699 | No text annotation | ||
| IL_4V7R_377 | 1/D1/725:729, 1/D1/740:745 | No text annotation | ||
| IL_4V7R_378 | 1/D1/752:753, 1/D1/779:781 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_4V7R_380 | 1/D1/755:756, 1/D1/775:777 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
| IL_4V7R_381 | 1/D1/757:762, 1/D1/769:774 | No text annotation | ||
| IL_4V7R_382 | 1/D1/803:805, 1/D1/938:940 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_4V7R_383 | 1/D1/805:809, 1/D1/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_4V7R_384 | 1/D1/833:834, 1/D1/859:861 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_4V7R_385 | 1/D1/834:838, 1/D1/855:859 | Triple sheared | homologous IL_5TBW_030 NA | |
| IL_4V7R_386 | 1/D1/869:872, 1/D1/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_4V7R_387 | 1/D1/873:875, 1/D1/886:887 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_4V7R_388 | 1/D1/907:909, 1/D1/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_4V7R_389 | 1/D1/954:956, 1/D1/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_4V7R_390 | 1/D1/969:970, 1/D1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_4V7R_391 | 1/D1/976:981, 1/D1/1102:1105 | No text annotation | ||
| IL_4V7R_392 | 1/D1/983:985, 1/D1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_4V7R_393 | 1/D1/991:997, 1/D1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_4V7R_394 | 1/D1/997:998, 1/D1/1050:1052 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_4V7R_541 | 1/D1/999:1004, 1/D1/1046:1049 | No text annotation | homologous IL_8P9A_268 IL_26222.2 | |
| IL_4V7R_396 | 1/D1/1006:1009, 1/D1/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_4V7R_528 | 1/D1/1009:1011, 1/D1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_87907.2 | |
| IL_4V7R_398 | 1/D1/1013:1015, 1/D1/1036:1037 | Single bulged U | geometric IL_4WF9_038 IL_89505.4 | |
| IL_4V7R_399 | 1/D1/1015:1017, 1/D1/1035:1036 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_4V7R_402 | 1/D1/1069:1071, 1/D1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_4V7R_529 | 1/D1/1074:1076, 1/D1/1083:1084 | Single bulged A | geometric IL_5J7L_064 IL_31462.6 | |
| IL_4V7R_404 | 1/D1/1120:1122, 1/D1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_4V7R_405 | 1/D1/1167:1171, 1/D1/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_4V7R_406 | 1/D1/1173:1180, 1/D1/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_4V7R_407 | 1/D1/1180:1182, 1/D1/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_4V7R_408 | 1/D1/1187:1205, 1/D1/1299:1319 | No text annotation | ||
| IL_4V7R_409 | 1/D1/1207:1209, 1/D1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_4V7R_410 | 1/D1/1218:1226, 1/D1/1283:1287 | No text annotation | ||
| IL_4V7R_411 | 1/D1/1234:1238, 1/D1/1250:1254 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_4V7R_412 | 1/D1/1262:1266, 1/D1/1275:1277 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_4V7R_413 | 1/D1/1376:1378, 1/D1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_4V7R_414 | 1/D1/1385:1387, 1/D1/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_4V7R_415 | 1/D1/1388:1395, 1/D1/1415:1419 | Kink-turn | geometric IL_5TBW_059 NA | |
| IL_4V7R_416 | 1/D1/1398:1400, 1/D1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_4V7R_417 | 1/D1/1444:1451, 1/D1/2353:2359 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | geometric IL_4V9F_012 IL_59724.1 | |
| IL_4V7R_418 | 1/D1/1492:1495, 1/D1/1835:1836 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
| IL_4V7R_419 | 1/D1/1501:1505, 1/D1/1513:1515 | C-loop | geometric IL_7RQB_051 NA | |
| IL_4V7R_420 | 1/D1/1532:1536, 1/D1/1585:1590 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_4V7R_421 | 1/D1/1618:1620, 1/D1/1825:1826 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_4V7R_423 | 1/D1/1625:1628, 1/D1/1817:1820 | No text annotation | ||
| IL_4V7R_424 | 1/D1/1628:1631, 1/D1/1811:1817 | No text annotation | ||
| IL_4V7R_425 | 1/D1/1645:1649, 1/D1/1806:1810 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_4V7R_426 | 1/D1/1661:1663, 1/D1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_4V7R_427 | 1/D1/1669:1670, 1/D1/1778:1780 | No text annotation | ||
| IL_4V7R_428 | 1/D1/1670:1671, 1/D1/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_4V7R_531 | 1/D1/1695:1698, 1/D1/1747:1751 | No text annotation | geometric IL_5J7L_299 IL_68574.4 | |
| IL_4V7R_430 | 1/D1/1702:1707, 1/D1/1737:1743 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_4V7R_431 | 1/D1/1711:1717, 1/D1/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_4V7R_432 | 1/D1/1883:1889, 1/D1/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_4V7R_433 | 1/D1/1895:1897, 1/D1/2338:2340 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_4V7R_434 | 1/D1/1898:1901, 1/D1/2336:2337 | Major groove platform; stack outside cWW | homologous IL_5TBW_076 NA | |
| IL_4V7R_532 | 1/D1/1898:1906, 1/D1/2333:2337 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_4V7R_435 | 1/D1/1901:1906, 1/D1/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_4V7R_436 | 1/D1/1918:1923, 1/D1/1928:1934 | tSH-tSH-tHH-tHS | homologous IL_5TBW_078 NA | |
| IL_4V7R_437 | 1/D1/1940:1942, 1/D1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_4V7R_438 | 1/D1/1947:1948, 1/D1/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_4V7R_440 | 1/D1/2128:2129, 1/D1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_4V7R_441 | 1/D1/2156:2161, 1/D1/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_4V7R_442 | 1/D1/2196:2199, 1/D1/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_4V7R_443 | 1/D1/2200:2201, 1/D1/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_4V7R_444 | 1/D1/2204:2206, 1/D1/2237:2238 | No text annotation | ||
| IL_4V7R_445 | 1/D1/2206:2210, 1/D1/2235:2237 | No text annotation | ||
| IL_4V7R_446 | 1/D1/2211:2217, 1/D1/2228:2234 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_4V7R_447 | 1/D1/2250:2251, 1/D1/2265:2267 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_4V7R_448 | 1/D1/2276:2277, 1/D1/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_4V7R_449 | 1/D1/2277:2288, 1/D1/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_4V7R_450 | 1/D1/2391:2394, 1/D1/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_4V7R_451 | 1/D1/2396:2398, 1/D1/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_4V7R_452 | 1/D1/2409:2411, 1/D1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_4V7R_453 | 1/D1/2412:2413, 1/D1/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_4V7R_533 | 1/D1/2423:2425, 1/D1/2604:2607 | No text annotation | homologous IL_8P9A_323 IL_85599.2 | |
| IL_4V7R_457 | 1/D1/2444:2447, 1/D1/2499:2503 | No text annotation | ||
| IL_4V7R_458 | 1/D1/2450:2462, 1/D1/2493:2496 | No text annotation | ||
| IL_4V7R_459 | 1/D1/2466:2469, 1/D1/2476:2489 | No text annotation | ||
| IL_4V7R_460 | 1/D1/2520:2526, 1/D1/2584:2587 | No text annotation | ||
| IL_4V7R_461 | 1/D1/2614:2615, 1/D1/2625:2627 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_4V7R_462 | 1/D1/2666:2668, 1/D1/2686:2690 | No text annotation | ||
| IL_4V7R_463 | 1/D1/2718:2721, 1/D1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_4V7R_464 | 1/D1/2770:2773, 1/D1/2787:2788 | Single stack bend with bulge | homologous IL_5TBW_101 NA | |
| IL_4V7R_465 | 1/D1/2823:2824, 1/D1/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_4V7R_466 | 1/D1/2824:2826, 1/D1/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_021 NA | |
| IL_4V7R_467 | 1/D1/2826:2830, 1/D1/2858:2863 | No text annotation | ||
| IL_4V7R_469 | 1/D1/2835:2839, 1/D1/2849:2853 | Triple sheared | geometric IL_5TBW_106 NA | |
| IL_4V7R_470 | 1/D1/2876:2877, 1/D1/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_4V7R_471 | 1/D1/2879:2881, 1/D1/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_4V7R_472 | 1/D1/2881:2882, 1/D1/2940:2943 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_4V7R_473 | 1/D1/2889:2891, 1/D1/2912:2914 | Stack and bulge | geometric IL_2O3X_001 IL_31737.3 | |
| IL_4V7R_474 | 1/D1/2891:2892, 1/D1/2909:2912 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_4V7R_475 | 1/D1/2918:2920, 1/D1/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_4V7R_476 | 1/D1/2960:2961, 1/D1/2970:2972 | Single bulged A | geometric IL_2VPL_002 IL_31462.6 | |
| IL_4V7R_477 | 1/D1/3003:3007, 1/D1/3139:3145 | No text annotation | ||
| IL_4V7R_478 | 1/D1/3019:3025, 1/D1/3030:3035 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_4V9F_092 IL_26307.2 | |
| IL_4V7R_479 | 1/D1/3047:3051, 1/D1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_4V7R_480 | 1/D1/3054:3059, 1/D1/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_4V7R_481 | 1/D1/3063:3064, 1/D1/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_4V7R_482 | 1/D1/3103:3107, 1/D1/3127:3131 | UAA/GAN | homologous IL_5TBW_120 NA | |
| IL_4V7R_484 | 1/D1/3164:3166, 1/D1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_4V7R_485 | 1/D1/3168:3170, 1/D1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_4V7R_486 | 1/D1/3177:3179, 1/D1/3209:3211 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_4V7R_542 | 1/D1/3179:3189, 1/D1/3203:3209 | No text annotation | ||
| IL_4V7R_489 | 1/D1/3227:3230, 1/D1/3257:3258 | No text annotation | ||
| IL_4V7R_491 | 1/D1/3233:3235, 1/D1/3252:3254 | Isolated non-canonical cWW pair | homologous IL_5TBW_127 NA | |
| IL_4V7R_492 | 1/D1/3235:3238, 1/D1/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_4V7R_493 | 1/D1/3296:3297, 1/D1/3391:3393 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
| IL_4V7R_494 | 1/D1/3300:3303, 1/D1/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_4V7R_496 | 1/D1/3324:3325, 1/D1/3380:3383 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_4V7R_497 | 1/D1/3327:3330, 1/D1/3373:3378 | No text annotation | ||
| IL_4V7R_498 | 1/D1/3331:3336, 1/D1/3368:3372 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_4V7R_499 | 1/D1/3340:3345, 1/D1/3360:3364 | No text annotation | ||
| IL_4V7R_500 | 1/D2/15:16, 1/D2/63:65 | Multiple bulged bases | geometric IL_3R2D_001 IL_84476.1 | |
| IL_4V7R_501 | 1/D2/21:27, 1/D2/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_4V7R_502 | 1/D2/72:80, 1/D2/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_369 IL_04346.10 | |
| IL_4V7R_503 | 1/D2/84:87, 1/D2/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_4V7R_504 | 1/D3/64:67, 1/D3/92:96 | No text annotation | geometric IL_6AZ4_001 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V7R_002 | No text annotation | ||
| IL_4V7R_506 | No text annotation | ||
| IL_4V7R_026 | No text annotation | ||
| IL_4V7R_028 | No text annotation | ||
| IL_4V7R_507 | No text annotation | ||
| IL_4V7R_029 | No text annotation | ||
| IL_4V7R_036 | Isolated non-canonical cWW pair | ||
| IL_4V7R_508 | No text annotation | ||
| IL_4V7R_038 | No text annotation | ||
| IL_4V7R_509 | Tandem non-canonical cWW pairs | ||
| IL_4V7R_051 | Isolated non-canonical cWW pair | ||
| IL_4V7R_069 | Isolated non-canonical cWW pair | ||
| IL_4V7R_072 | No text annotation | ||
| IL_4V7R_074 | Isolated non-canonical cWW pair | ||
| IL_4V7R_076 | No text annotation | ||
| IL_4V7R_079 | No text annotation | ||
| IL_4V7R_091 | No text annotation | ||
| IL_4V7R_093 | Isolated non-canonical cWW pair | ||
| IL_4V7R_102 | No text annotation | ||
| IL_4V7R_105 | Tandem non-canonical cWW pairs | ||
| IL_4V7R_106 | Isolated non-canonical cWW pair | ||
| IL_4V7R_109 | No text annotation | ||
| IL_4V7R_111 | No text annotation | ||
| IL_4V7R_114 | No text annotation | ||
| IL_4V7R_119 | No text annotation | ||
| IL_4V7R_120 | No text annotation | ||
| IL_4V7R_124 | Isolated non-canonical cWW pair | ||
| IL_4V7R_127 | Isolated non-canonical cWW pair | ||
| IL_4V7R_132 | Isolated non-canonical cWW pair | ||
| IL_4V7R_144 | No text annotation | ||
| IL_4V7R_149 | No text annotation | ||
| IL_4V7R_150 | Isolated non-canonical cWW pair | ||
| IL_4V7R_152 | Isolated non-canonical cWW with bulges | ||
| IL_4V7R_159 | Isolated non-canonical cWW pair | ||
| IL_4V7R_165 | No text annotation | ||
| IL_4V7R_172 | No text annotation | ||
| IL_4V7R_179 | No text annotation | ||
| IL_4V7R_189 | Stack and bulge | ||
| IL_4V7R_204 | Double sheared | ||
| IL_4V7R_205 | Isolated cWH basepair | ||
| IL_4V7R_206 | Isolated non-canonical cWW pair | ||
| IL_4V7R_219 | Tandem non-canonical cWW pairs | ||
| IL_4V7R_229 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V7R_234 | Isolated non-canonical cWW pair | ||
| IL_4V7R_519 | No text annotation | ||
| IL_4V7R_238 | Isolated non-canonical cWW pair | ||
| IL_4V7R_239 | Single stack bend | ||
| IL_4V7R_245 | Isolated non-canonical cWW pair | ||
| IL_4V7R_256 | No text annotation | ||
| IL_4V7R_521 | No text annotation | ||
| IL_4V7R_279 | No text annotation | ||
| IL_4V7R_281 | No text annotation | ||
| IL_4V7R_522 | No text annotation | ||
| IL_4V7R_282 | No text annotation | ||
| IL_4V7R_289 | Isolated non-canonical cWW pair | ||
| IL_4V7R_291 | No text annotation | ||
| IL_4V7R_524 | No text annotation | ||
| IL_4V7R_525 | Tandem non-canonical cWW pairs | ||
| IL_4V7R_306 | Isolated non-canonical cWW pair | ||
| IL_4V7R_324 | Isolated non-canonical cWW pair | ||
| IL_4V7R_327 | No text annotation | ||
| IL_4V7R_329 | Isolated non-canonical cWW pair | ||
| IL_4V7R_331 | No text annotation | ||
| IL_4V7R_334 | No text annotation | ||
| IL_4V7R_347 | Isolated non-canonical cWW pair | ||
| IL_4V7R_356 | No text annotation | ||
| IL_4V7R_359 | Isolated non-canonical cWW pair | ||
| IL_4V7R_362 | No text annotation | ||
| IL_4V7R_364 | No text annotation | ||
| IL_4V7R_367 | No text annotation | ||
| IL_4V7R_369 | No text annotation | ||
| IL_4V7R_371 | No text annotation | ||
| IL_4V7R_372 | No text annotation | ||
| IL_4V7R_376 | Isolated non-canonical cWW pair | ||
| IL_4V7R_379 | Isolated non-canonical cWW pair | ||
| IL_4V7R_395 | No text annotation | ||
| IL_4V7R_397 | Tandem non-canonical cWW pairs | ||
| IL_4V7R_400 | No text annotation | ||
| IL_4V7R_401 | Isolated non-canonical cWW pair | ||
| IL_4V7R_403 | No text annotation | ||
| IL_4V7R_530 | No text annotation | ||
| IL_4V7R_422 | No text annotation | ||
| IL_4V7R_429 | No text annotation | ||
| IL_4V7R_439 | Stack and bulge | ||
| IL_4V7R_454 | Double sheared | ||
| IL_4V7R_455 | Isolated cWH basepair | ||
| IL_4V7R_456 | Isolated non-canonical cWW pair | ||
| IL_4V7R_468 | Tandem non-canonical cWW pairs | ||
| IL_4V7R_483 | Isolated non-canonical cWW pair | ||
| IL_4V7R_534 | No text annotation | ||
| IL_4V7R_487 | Isolated non-canonical cWW pair | ||
| IL_4V7R_488 | No text annotation | ||
| IL_4V7R_490 | Isolated non-canonical cWW pair | ||
| IL_4V7R_495 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V7R_047 | 1/A1/41:42, 1/A1/433:439, 1/A1/464:466 | No text annotation | homologous J3_8P9A_068 J3_67856.4 | |
| J3_4V7R_079 | 1/A1/633:635, 1/A1/861:865, 1/A1/965:966 | No text annotation | geometric J3_8P9A_071 J3_56052.5 | |
| J3_4V7R_080 | 1/A1/633:635, 1/A1/861:866, 1/A1/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_4V7R_001 | 1/A1/760:764, 1/A1/772:775, 1/A1/785:790 | No text annotation | ||
| J3_4V7R_002 | 1/A1/881:884, 1/A1/928:936, 1/A1/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_4V7R_003 | 1/A1/1037:1039, 1/A1/1080:1083, 1/A1/1090:1094 | No text annotation | ||
| J3_4V7R_004 | 1/A1/1161:1164, 1/A1/1581:1587, 1/A1/1609:1616 | No text annotation | ||
| J3_4V7R_005 | 1/A1/1168:1171, 1/A1/1468:1470, 1/A1/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
| J3_4V7R_081 | 1/A1/1180:1187, 1/A1/1198:1209, 1/A1/1454:1458 | No text annotation | homologous J3_8P9A_078 J3_83516.4 | |
| J3_4V7R_007 | 1/A1/1215:1220, 1/A1/1263:1267, 1/A1/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_4V7R_008 | 1/A1/1283:1288, 1/A1/1327:1332, 1/A1/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_4V7R_048 | 1/A1/1293:1294, 1/A1/1303:1308, 1/A1/1317:1322 | No text annotation | ||
| J3_4V7R_009 | 1/A1/1336:1338, 1/A1/1386:1389, 1/A1/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_4V7R_049 | 1/A1/1336:1338, 1/A1/1386:1391, 1/A1/1407:1415 | No text annotation | ||
| J3_4V7R_010 | 1/A1/1470:1474, 1/A1/1533:1540, 1/A1/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_4V7R_011 | 1/B1/113:117, 1/B1/151:160, 1/B1/261:267 | No text annotation | ||
| J3_4V7R_050 | 1/B1/185:189, 1/B1/205:214, 1/B1/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_4V7R_082 | 1/B1/340:356, 1/B1/363:368, 1/B3/21:24 | No text annotation | homologous J3_8CRE_004 J3_30040.2 | |
| J3_4V7R_083 | 1/B1/369:376, 1/B1/403:404, 1/B3/19:20 | No text annotation | geometric J3_8P9A_046 J3_60031.2 | |
| J3_4V7R_084 | 1/B1/369:379, 1/B1/390:404, 1/B3/19:20 | No text annotation | homologous J3_8CRE_006 J3_92134.2 | |
| J3_4V7R_012 | 1/B1/501:505, 1/B1/586:597, 1/B1/606:612 | No text annotation | ||
| J3_4V7R_013 | 1/B1/814:820, 1/B1/905:907, 1/B1/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_4V7R_014 | 1/B1/828:831, 1/B1/863:867, 1/B1/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_4V7R_054 | 1/B1/986:987, 1/B1/1062:1066, 1/B1/1092:1098 | No text annotation | ||
| J3_4V7R_015 | 1/B1/1230:1232, 1/B1/1256:1262, 1/B1/1277:1279 | No text annotation | ||
| J3_4V7R_016 | 1/B1/1479:1485, 1/B1/1857:1859, 1/B1/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_4V7R_017 | 1/B1/1488:1491, 1/B1/1837:1843, 1/B1/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_4V7R_055 | 1/B1/1526:1531, 1/B1/1591:1595, 1/B1/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_4V7R_056 | 1/B1/1537:1542, 1/B1/1551:1561, 1/B1/1578:1584 | No text annotation | ||
| J3_4V7R_057 | 1/B1/1631:1632, 1/B1/1641:1645, 1/B1/1810:1811 | No text annotation | ||
| J3_4V7R_058 | 1/B1/1654:1658, 1/B1/1791:1792, 1/B1/1796:1801 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_4V7R_018 | 1/B1/2432:2435, 1/B1/2512:2517, 1/B1/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_4V7R_019 | 1/B1/2529:2532, 1/B1/2547:2563, 1/B1/2578:2581 | No text annotation | ||
| J3_4V7R_059 | 1/B1/2651:2653, 1/B1/2754:2765, 1/B1/2793:2798 | No text annotation | homologous J3_8P9A_061 J3_20992.1 | |
| J3_4V7R_020 | 1/B1/2664:2666, 1/B1/2690:2692, 1/B1/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_4V7R_021 | 1/B1/2886:2889, 1/B1/2914:2916, 1/B1/2930:2936 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_4V7R_060 | 1/B1/3171:3176, 1/B1/3212:3220, 1/B1/3265:3279 | No text annotation | ||
| J3_4V7R_022 | 1/B1/3298:3300, 1/B1/3314:3320, 1/B1/3387:3390 | No text annotation | ||
| J3_4V7R_061 | 1/B1/3298:3303, 1/B1/3311:3320, 1/B1/3387:3390 | No text annotation | ||
| J3_4V7R_023 | 1/B2/9:14, 1/B2/66:68, 1/B2/110:112 | No text annotation | ||
| J3_4V7R_062 | 1/B3/44:45, 1/B3/58:64, 1/B3/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J3_4V7R_063 | 1/C1/41:42, 1/C1/433:439, 1/C1/464:466 | No text annotation | homologous J3_8P9A_068 J3_67856.4 | |
| J3_4V7R_085 | 1/C1/633:635, 1/C1/861:865, 1/C1/965:966 | No text annotation | geometric J3_8P9A_071 J3_56052.5 | |
| J3_4V7R_086 | 1/C1/633:635, 1/C1/861:866, 1/C1/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_4V7R_024 | 1/C1/760:764, 1/C1/772:775, 1/C1/785:790 | No text annotation | ||
| J3_4V7R_025 | 1/C1/881:884, 1/C1/928:936, 1/C1/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_4V7R_026 | 1/C1/1037:1039, 1/C1/1080:1083, 1/C1/1090:1094 | No text annotation | ||
| J3_4V7R_027 | 1/C1/1161:1164, 1/C1/1581:1587, 1/C1/1609:1616 | No text annotation | ||
| J3_4V7R_028 | 1/C1/1168:1171, 1/C1/1468:1470, 1/C1/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_4V7R_087 | 1/C1/1180:1187, 1/C1/1198:1209, 1/C1/1454:1458 | No text annotation | homologous J3_8P9A_078 J3_83516.4 | |
| J3_4V7R_030 | 1/C1/1215:1220, 1/C1/1263:1267, 1/C1/1442:1448 | No text annotation | ||
| J3_4V7R_031 | 1/C1/1283:1288, 1/C1/1327:1332, 1/C1/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_4V7R_064 | 1/C1/1293:1294, 1/C1/1303:1308, 1/C1/1317:1322 | No text annotation | ||
| J3_4V7R_032 | 1/C1/1336:1338, 1/C1/1386:1389, 1/C1/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_4V7R_065 | 1/C1/1336:1338, 1/C1/1386:1391, 1/C1/1407:1415 | No text annotation | ||
| J3_4V7R_033 | 1/C1/1470:1474, 1/C1/1533:1540, 1/C1/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_4V7R_034 | 1/D1/113:117, 1/D1/151:160, 1/D1/261:267 | No text annotation | ||
| J3_4V7R_066 | 1/D1/185:189, 1/D1/205:214, 1/D1/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_4V7R_088 | 1/D1/340:356, 1/D1/363:368, 1/D3/21:24 | No text annotation | homologous J3_8CRE_004 J3_30040.2 | |
| J3_4V7R_089 | 1/D1/369:376, 1/D1/403:404, 1/D3/19:20 | No text annotation | geometric J3_8P9A_046 J3_60031.2 | |
| J3_4V7R_090 | 1/D1/369:379, 1/D1/390:404, 1/D3/19:20 | No text annotation | homologous J3_8CRE_006 J3_92134.2 | |
| J3_4V7R_035 | 1/D1/501:506, 1/D1/584:597, 1/D1/606:612 | No text annotation | ||
| J3_4V7R_036 | 1/D1/814:820, 1/D1/905:907, 1/D1/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_4V7R_037 | 1/D1/828:831, 1/D1/863:867, 1/D1/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_4V7R_070 | 1/D1/986:987, 1/D1/1062:1066, 1/D1/1092:1098 | No text annotation | ||
| J3_4V7R_038 | 1/D1/1230:1232, 1/D1/1256:1262, 1/D1/1277:1279 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_4V7R_039 | 1/D1/1479:1485, 1/D1/1857:1859, 1/D1/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_4V7R_040 | 1/D1/1488:1491, 1/D1/1837:1843, 1/D1/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_4V7R_071 | 1/D1/1526:1531, 1/D1/1591:1595, 1/D1/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_4V7R_091 | 1/D1/1537:1542, 1/D1/1551:1560, 1/D1/1579:1584 | No text annotation | ||
| J3_4V7R_073 | 1/D1/1631:1632, 1/D1/1641:1645, 1/D1/1810:1811 | No text annotation | ||
| J3_4V7R_074 | 1/D1/1654:1658, 1/D1/1791:1792, 1/D1/1796:1801 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_4V7R_041 | 1/D1/2432:2435, 1/D1/2512:2517, 1/D1/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_4V7R_042 | 1/D1/2529:2532, 1/D1/2547:2563, 1/D1/2578:2581 | No text annotation | ||
| J3_4V7R_075 | 1/D1/2651:2653, 1/D1/2754:2765, 1/D1/2793:2798 | No text annotation | homologous J3_8P9A_061 J3_20992.1 | |
| J3_4V7R_043 | 1/D1/2664:2666, 1/D1/2690:2692, 1/D1/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_4V7R_044 | 1/D1/2886:2889, 1/D1/2914:2916, 1/D1/2930:2936 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_4V7R_076 | 1/D1/3171:3176, 1/D1/3212:3220, 1/D1/3265:3279 | No text annotation | ||
| J3_4V7R_045 | 1/D1/3298:3300, 1/D1/3314:3320, 1/D1/3387:3390 | No text annotation | ||
| J3_4V7R_077 | 1/D1/3298:3303, 1/D1/3311:3320, 1/D1/3387:3390 | No text annotation | ||
| J3_4V7R_046 | 1/D2/9:14, 1/D2/66:68, 1/D2/110:112 | No text annotation | ||
| J3_4V7R_078 | 1/D3/44:45, 1/D3/58:64, 1/D3/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J4_4V7R_001 | 1/A1/99:107, 1/A1/307:309, 1/A1/357:362, 1/A1/382:384 | No text annotation | ||
| J4_4V7R_002 | 1/A1/616:624, 1/A1/975:980, 1/A1/1021:1032, 1/A1/1103:1105 | No text annotation | ||
| J4_4V7R_003 | 1/B1/112:113, 1/B1/267:272, 1/B1/293:299, 1/B1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_4V7R_004 | 1/B1/185:189, 1/B1/205:208, 1/B1/212:214, 1/B1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_4V7R_005 | 1/B1/1451:1457, 1/B1/1475:1476, 1/B1/1877:1880, 1/B1/2352:2353 | No text annotation | ||
| J4_4V7R_006 | 1/B1/1492:1496, 1/B1/1520:1525, 1/B1/1614:1615, 1/B1/1829:1836 | No text annotation | ||
| J4_4V7R_007 | 1/B1/1495:1496, 1/B1/1520:1525, 1/B1/1614:1615, 1/B1/1829:1835 | No text annotation | ||
| J4_4V7R_008 | 1/B1/1674:1675, 1/B1/1693:1694, 1/B1/1752:1753, 1/B1/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_4V7R_009 | 1/B1/2130:2134, 1/B1/2146:2150, 1/B1/2186:2190, 1/B1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_4V7R_010 | 1/B1/2192:2194, 1/B1/2248:2251, 1/B1/2265:2276, 1/B1/2310:2315 | No text annotation | ||
| J4_4V7R_011 | 1/B1/2654:2658, 1/B1/2712:2716, 1/B1/2740:2742, 1/B1/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_4V7R_012 | 1/B1/3010:3014, 1/B1/3040:3043, 1/B1/3098:3100, 1/B1/3134:3136 | No text annotation | ||
| J4_4V7R_013 | 1/C1/99:107, 1/C1/307:309, 1/C1/357:362, 1/C1/382:384 | No text annotation | ||
| J4_4V7R_014 | 1/C1/616:624, 1/C1/975:980, 1/C1/1021:1032, 1/C1/1103:1105 | No text annotation | ||
| J4_4V7R_015 | 1/D1/112:113, 1/D1/267:272, 1/D1/293:299, 1/D1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_4V7R_016 | 1/D1/185:189, 1/D1/205:208, 1/D1/212:214, 1/D1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_4V7R_017 | 1/D1/1451:1457, 1/D1/1475:1476, 1/D1/1877:1880, 1/D1/2352:2353 | No text annotation | ||
| J4_4V7R_018 | 1/D1/1492:1496, 1/D1/1520:1525, 1/D1/1614:1615, 1/D1/1829:1836 | No text annotation | ||
| J4_4V7R_019 | 1/D1/1495:1496, 1/D1/1520:1525, 1/D1/1614:1615, 1/D1/1829:1835 | No text annotation | ||
| J4_4V7R_020 | 1/D1/1674:1675, 1/D1/1693:1694, 1/D1/1752:1753, 1/D1/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_4V7R_021 | 1/D1/2130:2134, 1/D1/2146:2150, 1/D1/2186:2190, 1/D1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_4V7R_022 | 1/D1/2192:2194, 1/D1/2248:2250, 1/D1/2267:2276, 1/D1/2310:2315 | No text annotation | ||
| J4_4V7R_023 | 1/D1/2654:2658, 1/D1/2712:2716, 1/D1/2740:2742, 1/D1/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_4V7R_024 | 1/D1/3010:3014, 1/D1/3040:3043, 1/D1/3098:3100, 1/D1/3134:3136 | No text annotation | ||
| J5_4V7R_001 | 1/A1/31:35, 1/A1/473:479, 1/A1/509:516, 1/A1/536:546, 1/A1/592:595 | No text annotation | ||
| J5_4V7R_002 | 1/A1/54:57, 1/A1/90:97, 1/A1/386:388, 1/A1/409:411, 1/A1/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_4V7R_003 | 1/A1/124:143, 1/A1/172:185, 1/A1/200:208, 1/A1/257:269, 1/A1/286:293 | No text annotation | ||
| J5_4V7R_017 | 1/A1/635:642, 1/A1/692:700, 1/A1/738:745, 1/A1/806:821, 1/A1/850:861 | No text annotation | ||
| J5_4V7R_004 | 1/B1/658:663, 1/B1/799:802, 1/B1/941:944, 1/B1/1375:1376, 1/B1/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_4V7R_005 | 1/B1/675:678, 1/B1/702:706, 1/B1/713:723, 1/B1/747:751, 1/B1/782:787 | No text annotation | ||
| J5_4V7R_006 | 1/B1/1906:1914, 1/B1/1938:1939, 1/B1/2109:2110, 1/B1/2114:2122, 1/B1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_4V7R_007 | 1/B1/2399:2406, 1/B1/2815:2823, 1/B1/2867:2875, 1/B1/2952:2957, 1/B1/2975:2980 | No text annotation | ||
| J5_4V7R_008 | 1/B1/2416:2419, 1/B1/2611:2614, 1/B1/2627:2628, 1/B1/2650:2651, 1/B1/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_4V7R_009 | 1/C1/31:35, 1/C1/473:479, 1/C1/509:516, 1/C1/536:546, 1/C1/592:595 | No text annotation | ||
| J5_4V7R_010 | 1/C1/54:57, 1/C1/90:97, 1/C1/386:388, 1/C1/409:411, 1/C1/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_4V7R_011 | 1/C1/124:143, 1/C1/172:185, 1/C1/200:208, 1/C1/257:269, 1/C1/286:293 | No text annotation | ||
| J5_4V7R_018 | 1/C1/635:642, 1/C1/692:699, 1/C1/739:744, 1/C1/807:821, 1/C1/850:861 | No text annotation | ||
| J5_4V7R_012 | 1/D1/658:663, 1/D1/799:802, 1/D1/941:944, 1/D1/1375:1376, 1/D1/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_4V7R_013 | 1/D1/675:678, 1/D1/702:706, 1/D1/713:723, 1/D1/747:751, 1/D1/782:787 | No text annotation | ||
| J5_4V7R_014 | 1/D1/1906:1914, 1/D1/1938:1939, 1/D1/2109:2110, 1/D1/2114:2122, 1/D1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_4V7R_015 | 1/D1/2399:2406, 1/D1/2815:2823, 1/D1/2867:2875, 1/D1/2952:2957, 1/D1/2975:2980 | No text annotation | ||
| J5_4V7R_016 | 1/D1/2416:2419, 1/D1/2611:2614, 1/D1/2627:2628, 1/D1/2650:2651, 1/D1/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_4V7R_001 | 1/A1/633:642, 1/A1/692:700, 1/A1/738:746, 1/A1/805:821, 1/A1/850:865, 1/A1/965:966 | No text annotation | ||
| J6_4V7R_002 | 1/A1/633:642, 1/A1/692:700, 1/A1/738:746, 1/A1/805:821, 1/A1/850:866, 1/A1/962:966 | No text annotation | ||
| J6_4V7R_003 | 1/C1/633:642, 1/C1/692:700, 1/C1/738:746, 1/C1/805:821, 1/C1/850:865, 1/C1/965:966 | No text annotation | ||
| J6_4V7R_004 | 1/C1/633:642, 1/C1/692:700, 1/C1/738:746, 1/C1/805:821, 1/C1/850:866, 1/C1/962:966 | No text annotation | ||
| J7_4V7R_003 | 1/B1/949:954, 1/B1/967:968, 1/B1/1114:1117, 1/B1/1141:1146, 1/B1/1157:1161, 1/B1/1338:1339, 1/B1/1365:1370 | No text annotation | ||
| J7_4V7R_002 | 1/D1/949:954, 1/D1/967:968, 1/D1/1114:1117, 1/D1/1141:1146, 1/D1/1157:1161, 1/D1/1338:1339, 1/D1/1365:1370 | No text annotation | ||
| J9_4V7R_003 | 1/B1/20:27, 1/B1/58:68, 1/B1/75:79, 1/B1/106:110, 1/B1/321:333, 1/B3/30:42, 1/B3/102:107, 1/B3/115:116, 1/B3/137:139 | No text annotation | ||
| J9_4V7R_004 | 1/D1/20:27, 1/D1/58:68, 1/D1/75:79, 1/D1/106:110, 1/D1/321:333, 1/D3/30:42, 1/D3/102:107, 1/D3/115:116, 1/D3/137:139 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V7R_006 | No text annotation | ||
| J3_4V7R_051 | No text annotation | ||
| J3_4V7R_052 | No text annotation | ||
| J3_4V7R_053 | No text annotation | ||
| J3_4V7R_029 | No text annotation | ||
| J3_4V7R_067 | No text annotation | ||
| J3_4V7R_068 | No text annotation | ||
| J3_4V7R_069 | No text annotation | ||
| J3_4V7R_072 | No text annotation | ||
| J7_4V7R_001 | No text annotation | ||
| J9_4V7R_001 | No text annotation | ||
| J9_4V7R_002 | No text annotation |
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