HL_6C65_001
3D structure
- PDB id
- 6C65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the Mango-II-A22U Fluorescent Aptamer Bound to TO1-Biotin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAGGAGAGGAGAGGUAGAGGAGAG
- Length
- 26 nucleotides
- Bulged bases
- 6C65|1|A|A|12, 6C65|1|A|A|17, 6C65|1|A|A|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89785.1
- Basepair signature
- cWW-tSH-cWH-cHW-R-cHW-cWH-cHW-cWH-tSH-cHW-R-R-cWH-cWH-cHW-cWH-cWH-tSH-R-R
- Number of instances in this motif group
- 1
Unit IDs
6C65|1|A|C|6
6C65|1|A|G|7
6C65|1|A|A|8
6C65|1|A|A|9
6C65|1|A|G|10
6C65|1|A|G|11
6C65|1|A|A|12
6C65|1|A|G|13
6C65|1|A|A|14
6C65|1|A|G|15
6C65|1|A|G|16
6C65|1|A|A|17
6C65|1|A|G|18
6C65|1|A|A|19
6C65|1|A|G|20
6C65|1|A|G|21
6C65|1|A|U|22
6C65|1|A|A|23
6C65|1|A|G|24
6C65|1|A|A|25
6C65|1|A|G|26
6C65|1|A|G|27
6C65|1|A|A|28
6C65|1|A|G|29
6C65|1|A|A|30
6C65|1|A|G|31
Current chains
- Chain A
- RNA (36-MER)
Nearby chains
- Chain B
- RNA (36-MER)
- Chain C
- RNA (35-MER)
Coloring options: