IL_4V5N_084

3D structure

PDB id

4V5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5N_084 not in the Motif Atlas

Homologous match to IL_7RQB_027

Geometric discrepancy: 0.1264

The information below is about IL_7RQB_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.1

Basepair signature

cWW-L-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V5N|1|BA|U|858
4V5N|1|BA|G|859
4V5N|1|BA|U|860
4V5N|1|BA|A|861
4V5N|1|BA|G|862
*
4V5N|1|BA|C|915
4V5N|1|BA|G|916
4V5N|1|BA|A|917
4V5N|1|BA|A|918
4V5N|1|BA|G|919

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain B3

50S RIBOSOMAL PROTEIN L30

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S RIBOSOMAL PROTEIN L16