IL_7A1G_082

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A1G_082 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.1537

The information below is about IL_4E48_006

Detailed Annotation

UU cWW

Broad Annotation

Isolated non-canonical cWW

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7A1G|1|2|G|1642
7A1G|1|2|U|1643
7A1G|1|2|C|1644
*
7A1G|1|2|G|1757
7A1G|1|2|U|1758
7A1G|1|2|C|1759

Current chains

Chain 2

18S ribosomal RNA

Nearby chains