RNA 3D Hub //

Motif IL_86319.3 Version IL_86319.3 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-52-63-43-5
1 IL_8C3A_0648C3A0.68181Isolated non-canonical cWW pair1 LSU rRNAU1394U1396G1397*C1406U1407G1408cWWcWwcWW
2 IL_4V88_4264V880.45401Isolated non-canonical cWW pairA6 SSU rRNAG819U821U822*A850U851C852cWWcWwcWW
3 IL_4V88_4574V880.62902Isolated non-canonical cWW pairA6 SSU rRNAU1369U1372C1373*G1352U1353G1354cWWcWwcWW
4 IL_5B2P_0025B2P0.64461Isolated non-canonical cWW pairBGuide RNAG28U30G31*C44U45C46cWWcWwcWW
5 IL_8UO6_0028UO60.45591BHIV-1 Rev Response Element Stem-Loop II with tRNA scaffoldG60C62G63*C41G42C43cWWcWW
6 IL_4V83_2354V830.29080Isolated non-canonical cWW pairCVdomain 3 of PSIC IGR IRES RNAG6173U6174G6175*C6153U6154C6155cWWncwWcWW
7 IL_7A0S_0117A0S0.30360Isolated non-canonical cWW pairX LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
8 IL_8VTW_0148VTW0.31870Isolated non-canonical cWW pair1A LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
9 IL_5J7L_2575J7L0.32680Isolated non-canonical cWW pairDA LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
10 IL_4WF9_0174WF90.32620Isolated non-canonical cWW pairX LSU rRNAA618U619G620*C607C608U609cWWcWWcWW
11 IL_3TD0_0013TD00.32120Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
12 IL_4ZC7_0014ZC70.30550Isolated non-canonical cWW pairA+BRNA duplexG5U6C7*G42U43C44cWWncwWcWW
13 IL_4ZC7_0044ZC70.37510Isolated non-canonical cWW pairB+ARNA duplexG28U29C30*G19U20C21cWWncwWcWW
14 IL_4PDQ_0014PDQ0.40650Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcWW
15 IL_5Z1I_0045Z1I0.46120Isolated non-canonical cWW pairARNA (21-mer)G5||||8_555U6||||8_555C7||||8_555*G19U20C21cWWcWwcWW
16 IL_5Z1I_0015Z1I0.46120Isolated non-canonical cWW pairARNA (21-mer)G5U6C7*G19||||8_555U20||||8_555C21||||8_555cWWcWwcWW
17 IL_4P43_0044P430.40530Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
18 IL_5J7L_2735J7L0.57380Isolated non-canonical cWW pairDA LSU rRNAA905U906G907*U870U871U872cWWcWwcWW
19 IL_4V88_4334V880.54110Isolated non-canonical cWW pairA6 SSU rRNAU917U918A919*U893U894G895ncWWcWwcWW
20 IL_6SX2_0016SX20.45090Isolated non-canonical cWW pairC+DRNA (19-mer)U9U10A11*U9U10A11cWWncWwcWW
21 IL_8C3A_4068C3A0.40860Isolated non-canonical cWW pairCM SSU rRNAA204U205U206*A255C256U257cWWcWWcWW
22 IL_4V88_3984V880.44900Isolated non-canonical cWW pairA6 SSU rRNAA257C258U259*A206U207U208cWWcWWcWW
23 IL_8C3A_4318C3A0.48640Isolated non-canonical cWW pairCM SSU rRNAU733U734U735*A783U784G785cWWcWwcWW
24 IL_4V88_4244V880.50650Isolated non-canonical cWW pairA6 SSU rRNAU748U749U750*A799U800G801cWWcWwcWW
25 IL_5J7L_3265J7L0.46420Isolated non-canonical cWW pairDA LSU rRNAU2085U2086G2087*C2232U2233G2234cWWcWwcWW
26 IL_8VTW_0828VTW0.50300Isolated non-canonical cWW pair1A LSU rRNAU2232U2233G2234*C2085U2086G2087cWWcWwcWW
27 IL_7A0S_0787A0S0.46100Isolated non-canonical cWW pairX LSU rRNAU2211U2212G2213*C2068U2069G2070cWWcWwcWW
28 IL_3RG5_0023RG50.44490Isolated non-canonical cWW pairBSelenocysteine transfer RNAC66U67U67|||A*A5|||BU6G7cWWcWwcWW
29 IL_4KZD_0034KZD0.37860Isolated non-canonical cWW pairRRNA (84-MER)C66U67C68*G17U18G19cWWcWwcWW
30 IL_7MDL_0017MDL0.43060Isolated non-canonical cWW pairESelenocysteine transfer RNAC66||AU67||AU67||A|A*A5||A|BU6||AG7||AcWWcWwcWW
31 IL_8G9Z_0018G9Z0.46440Isolated non-canonical cWW pairESelenocysteine transfer RNAC66||AU67||AU67||A|A*A5||A|BU6||AG7||AcWWcWwcWW
32 IL_1MZP_0011MZP0.41650Isolated non-canonical cWW pairBfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
33 IL_4PCJ_0014PCJ0.38660Isolated non-canonical cWW pairAtrCUG-3('5)C1U2G3*C33U34G35cWWcWwcWW
34 IL_5VCI_0015VCI0.38930Isolated non-canonical cWW pairA+BRNA (22-mer) + RNA (12-mer)C1U2G3*C10U11G12cWWcWwcWW
35 IL_5MWI_0015MWI0.36210Isolated non-canonical cWW pairARNA G(CUG)8C duplexC2U3G4*C23||||4_555U24||||4_555G25||||4_555cWWcWwcWW
36 IL_5MWI_0085MWI0.36210Isolated non-canonical cWW pairARNA G(CUG)8C duplexC2||||4_555U3||||4_555G4||||4_555*C23U24G25cWWcWwcWW
37 IL_6E7L_0036E7L0.33140Isolated non-canonical cWW pairARNA (22-mer)C17U18G19*C4||||7_375U5||||7_375G6||||7_375ncWWcWWcWwcWW
38 IL_6E7L_0016E7L0.33140Isolated non-canonical cWW pairARNA (22-mer)C17||||7_375U18||||7_375G19||||7_375*C4U5G6ncWWcWWcWwcWW
39 IL_6CZR_1576CZR0.36000Isolated non-canonical cWW pair1a SSU rRNAG1175U1176C1177*G1044U1045C1046cWWncWwcWW
40 IL_4LFB_0474LFB0.39490Isolated non-canonical cWW pairA SSU rRNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
41 IL_5J7L_0505J7L0.38430Isolated non-canonical cWW pairAA SSU rRNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
42 IL_4V9F_0474V9F0.32780Isolated non-canonical cWW pair0 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
43 IL_4KNQ_0014KNQ0.41110Isolated non-canonical cWW pairBRNA (20-mer)C204C205G206*C216||||4_555C217||||4_555G218||||4_555cWWcwWcWW
44 IL_4KNQ_0054KNQ0.41110Isolated non-canonical cWW pairBRNA (20-mer)C204||||4_555C205||||4_555G206||||4_555*C216C217G218cWWcwWcWW
45 IL_1T0E_0021T0E0.40720Isolated non-canonical cWW pairC+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
46 IL_1ZX7_0041ZX70.38030Isolated non-canonical cWW pairD+CRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
47 IL_1ZX7_0061ZX70.34760Isolated non-canonical cWW pairF+ERNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
48 IL_4P3U_0064P3U0.38620Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
49 IL_4P43_0014P430.38190Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
50 IL_4K31_0014K310.37640Isolated non-canonical cWW pairC+BRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
51 IL_4K31_0044K310.37530Isolated non-canonical cWW pairB+CRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
52 IL_4KYY_0014KYY0.34930Isolated non-canonical cWW pairA+BRNA 17-merG5U6U7*A11U12C13cWWcWwcWW
53 IL_4V88_4464V880.36440Isolated non-canonical cWW pairA6 SSU rRNAG1213U1214C1215*G1448U1449U1450cWWncWwcWW
54 IL_4P3T_0014P3T0.35950Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWncWwcWW
55 IL_7XPL_0017XPL0.36240Isolated non-canonical cWW pairG+HBMG3 RNA strand A + BMG3 RNA strand BC22U23U24*A6U7G8cWWcWwcWW
56 IL_2O3V_0012O3V0.40310Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
57 IL_2O3X_0042O3X0.48880Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
58 IL_5TBW_1155TBW0.43580Isolated non-canonical cWW pair1 LSU rRNAA3040U3041U3042*A3012U3013U3014cWWcWwcWW
59 IL_8C3A_1248C3A0.42420Isolated non-canonical cWW pair1 LSU rRNAA3012U3013U3014*A2984U2985U2986cWWcWwcWW
60 IL_5WTI_0025WTI0.42090Isolated non-canonical cWW pairBRNA (123-MER)G18U19C20*G10U11C12cWWcWwcWW
61 IL_4TS2_0044TS20.40410Isolated non-canonical cWW pairX+YSpinach aptamer RNA, bimolecular constructG20U21G22*C77U78C79cWWcWwcWW
62 IL_5TBW_0345TBW0.36390Isolated non-canonical cWW pair1 LSU rRNAU954U955U956*A965U966A967cWWcWwcWW
63 IL_8C3A_0378C3A0.36280Isolated non-canonical cWW pair1 LSU rRNAU950U951U952*A961U962A963cWWcWwcWW
64 IL_5TBW_1225TBW0.38980Isolated non-canonical cWW pair1 LSU rRNAU3280U3281U3282*A3168U3169A3170cWWcWwcWW
65 IL_1MFQ_0021MFQ0.38780Isolated non-canonical cWW pairA SRP RNAG120U121U122*A228U229C230cWWcWwcWW
66 IL_4JGN_0054JGN0.34810Isolated non-canonical cWW pairERNA (20-mer)C505||||4_555U506||||4_555G507||||4_555*C517U518G519cWWcWwcWW
67 IL_4JGN_0014JGN0.34810Isolated non-canonical cWW pairERNA (20-mer)C505U506G507*C517||||4_555U518||||4_555G519||||4_555cWWcWwcWW
68 IL_3U4M_0013U4M0.37720Isolated non-canonical cWW pairB LSU rRNAC2179U2180U2181*A2108U2109G2110cWWcWwcWW
69 IL_5ZTM_0025ZTM0.32500Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2G157U158U159*A123U124C125cWWcWwcWW
70 IL_2O3Y_0012O3Y0.34940Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
71 IL_3TD0_0063TD00.36830Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
72 IL_2OE5_0012OE50.36730Isolated non-canonical cWW pairA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
73 IL_2OE8_0012OE80.36130Isolated non-canonical cWW pairA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
74 IL_4P3T_0064P3T0.34020Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
75 IL_4KYY_0034KYY0.33700Isolated non-canonical cWW pairB+ARNA 17-merG5U6U7*A11U12C13cWWcWwcWW
76 IL_2O3Y_0042O3Y0.32300Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
77 IL_3BNN_0083BNN0.35050Isolated non-canonical cWW pairD+CA site of human ribosomeG3U4C5*G17U18C19cWWcWwcWW
78 IL_3BNN_0053BNN0.33350Isolated non-canonical cWW pairD+CA site of human ribosomeG17U18C19*G3U4C5cWWcWwcWW
79 IL_3BNR_0123BNR0.32950Isolated non-canonical cWW pairD+CA site of human mitochondrial ribosome, chain threeG3U4C5*G19U20C21cWWcWwcWW
80 IL_5B2P_0015B2P0.34660Isolated non-canonical cWW pairBGuide RNAG48U49A50*U24U25C26cWWcWwcWW
81 IL_4P3U_0074P3U0.33810Isolated non-canonical cWW pairC+DRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
82 IL_1U6B_0051U6B0.41630Isolated non-canonical cWW pairB197-MERC100U101U102*A117U118G119cWWcWwcWW
83 IL_2O3V_0042O3V0.36340Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
84 IL_3BNT_0063BNT0.37600Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
85 IL_3BNT_0013BNT0.37600Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
86 IL_7L0Z_0017L0Z0.40520Isolated non-canonical cWW pairGRNA (69-MER)C58U59C60*G10U11G12cWWcWwcWW
87 IL_3BNR_0073BNR0.40170Isolated non-canonical cWW pairD+CA site of human mitochondrial ribosome, chain threeG17U18C19*G5U6C7cWWcWwcWW
88 IL_2ET8_0042ET80.42790Isolated non-canonical cWW pairA+BRNA (22-mer)G18U19C20*G27U28C29cWWcWwcWW
89 IL_1L9A_0071L9A0.39200Isolated cWH basepairBsignal recognition particle RNA S domainG187G188C189*G210U211C212cWWcWW
90 IL_4P3U_0124P3U0.36090Isolated non-canonical cWW pairD+CRNA (23-mer)G28U29C30*G19U20C21cWWncWwcWW
91 IL_2ZKO_0012ZKO0.36430Isolated non-canonical cWW pairC+DRNA (21-mer)U9U10A11*U9U10A11cWWcWW
92 IL_3GM7_0013GM70.31060Isolated non-canonical cWW pairG+HRNA (18-mer)C1U2G3*C16U17G18cWWcWW
93 IL_5MWI_0065MWI0.32660Isolated non-canonical cWW pairARNA G(CUG)8C duplexC8||||4_555U9||||4_555G10||||4_555*C17U18G19cWWcWW
94 IL_5MWI_0035MWI0.32660Isolated non-canonical cWW pairARNA G(CUG)8C duplexC8U9G10*C17||||4_555U18||||4_555G19||||4_555cWWcWW
95 IL_4E48_0054E480.34740Isolated non-canonical cWW pairB+ARNA (20-mer)C25U26G27*C14U15G16cWWcWW
96 IL_8C3A_4528C3A0.38090Isolated non-canonical cWW pairCM SSU rRNAG1198U1199C1200*G1434U1435U1436ncWWncWwcWW
97 IL_3SZX_0033SZX0.34710Isolated non-canonical cWW pairB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
98 IL_7KFN_0017KFN0.42470Isolated non-canonical cWW pairB+CGli1 8AZ 23mer RNA + Gli1 1W5 23mer RNAG14A15G16*C8C9C10cWWcWWcWW
99 IL_5ED2_0045ED20.42070Isolated non-canonical cWW pairE+FRNA (23-mer)G14A15G16*C8C9C10cWWcWWcWW
100 IL_6IA2_0026IA20.38220Isolated non-canonical cWW pairB+ARNA (19-mer)G11||AA12G13*C7C8C9cWWcWWcWW
101 IL_6IA2_0056IA20.37460Isolated non-canonical cWW pairB+ARNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
102 IL_8C3A_1308C3A0.36250Isolated non-canonical cWW pair1 LSU rRNAC3134A3135C3136*G3249C3250G3251cWWncWWcWW
103 IL_4LFB_0614LFB0.34410Isolated non-canonical cWW pairA SSU rRNAG1474G1475G1476*C1424U1425C1426cWWncWWcWW
104 IL_8AF0_0018AF00.36390Isolated non-canonical cWW pairD+CRNA (19-mer)A37C38G39*C31C32U33cWWcWW
105 IL_5TBW_0795TBW0.32620Isolated non-canonical cWW pair1 LSU rRNAA2106A2107C2108*G1940C1941U1942cWWcWWcWW
106 IL_8SSW_0048SSW0.31200D+CRNA (28-MER)A8U9U10*A17G18U19cWWncWWacWW
107 IL_8SSW_0018SSW0.31170C+DRNA (28-MER)G5U6C7*G20G21C22cWWncWWacWW
108 IL_4KR9_0014KR90.32330MRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
109 IL_4KR9_0024KR90.32100XRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
110 IL_2ZNI_0012ZNI0.32920Cbacterial tRNAG29G30A31*U39U40C41cWWncWWacWW
111 IL_7MLW_0017MLW0.36630Isolated non-canonical cWW pairFGuanidine-I riboswitchU4C5G6*C57A58A59cWWcWWacWW
112 IL_8C3A_1188C3A0.37330Isolated non-canonical cWW pair1 LSU rRNAC2861A2862U2863*G2884C2885G2886cWWncWWcWW
113 IL_5TBW_1105TBW0.36430Isolated non-canonical cWW pair1 LSU rRNAC2889A2890U2891*G2912C2913G2914cWWncWWacWW
114 IL_5E81_3715E810.30910Self complementary1K tRNAA41A42U43*G27U28U29cWWcWWncWW
115 IL_5E81_3765E810.390803L tRNAG27U28U29*A41A42U43ncWWncWWcWW
116 IL_8AMI_0018AMI0.24950Other ILB+ARNA (9-mer)U4G5||AG6*U4G5G6cWWcWW
117 IL_4V88_4654V880.20890Isolated non-canonical cWW pairA6 SSU rRNAG1642U1643C1644*G1757U1758C1759cWWcWW
118 IL_8C3A_4728C3A0.25290Isolated non-canonical cWW pairCM SSU rRNAG1629U1630C1631*G1744U1745C1746cWWcWW
119 IL_4V88_4754V880.31100A6 SSU rRNAU1684G1685C1686*G1715C1716G1717cWWncWWcWW
120 IL_8C3A_0088C3A0.14910Isolated non-canonical cWW pair1 LSU rRNAC124U125G126*C140C141G142cWWcWWcWW
121 IL_5TBW_0085TBW0.17410Isolated non-canonical cWW pair1 LSU rRNAC125U126G127*C141C142G143cWWcWWcWW
122 IL_4V9F_0234V9F0.26030Isolated non-canonical cWW pair0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
123 IL_8C3A_0298C3A0.23130Isolated non-canonical cWW pair1 LSU rRNAC934U935G936*C799C800G801cWWncWWcWW
124 IL_5TBW_0275TBW0.24370Isolated non-canonical cWW pair1 LSU rRNAC938U939G940*C803C804G805cWWcWWcWW
125 IL_7A0S_0147A0S0.21570Isolated non-canonical cWW pairX LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
126 IL_4WF9_0204WF90.20800Isolated non-canonical cWW pairX LSU rRNAC851U852G853*C717C718G719cWWcWWcWW
127 IL_5J7L_2595J7L0.19260Isolated non-canonical cWW pairDA LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
128 IL_8VTW_0168VTW0.17540Isolated non-canonical cWW pair1A LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
129 IL_4LFB_0104LFB0.14770Isolated non-canonical cWW pairA SSU rRNAC186C187C188*G190|||KU190|||LG191cWWcWWcWW
130 IL_4LFB_0634LFB0.14510Isolated non-canonical cWW pairA SSU rRNAG1464C1465C1466*G1435U1436C1437cWWcWWcWW
131 IL_6CZR_1716CZR0.18250Isolated non-canonical cWW pair1a SSU rRNAG1442C1443C1444*G1418U1419C1420cWWncWWcWW
132 IL_5TBW_0465TBW0.15850Isolated non-canonical cWW pair1 LSU rRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
133 IL_8C3A_0498C3A0.18430Isolated non-canonical cWW pair1 LSU rRNAA1116U1117U1118*A1132C1133U1134cWWcWWcWW
134 IL_8C3A_0238C3A0.19390Isolated non-canonical cWW pair1 LSU rRNAG788C789U790*G666U667C668cWWcWWcWW
135 IL_5TBW_0215TBW0.19530Isolated non-canonical cWW pair1 LSU rRNAG792C793U794*G668U669C670cWWcWWcWW
136 IL_7A0S_0207A0S0.20830Isolated non-canonical cWW pairX LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
137 IL_4V9F_0174V9F0.14030Isolated non-canonical cWW pair0 LSU rRNAC558U559U560*A597C598G599cWWcWWcWW
138 IL_3RW6_0043RW60.00000Isolated non-canonical cWW pairHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
139 IL_7ECP_0027ECP0.17180Isolated non-canonical cWW pairB+ARNA (12-mer)G3C4C5*G8U9C10cWWcWWcWW
140 IL_7ECP_0017ECP0.18420Isolated non-canonical cWW pairB+ARNA (12-mer)G8U9C10*G3C4C5cWWcWWcWW
141 IL_3LA5_0013LA50.25640APurine riboswitchU16U17C18*G78G79A80cWWncWWcWW
142 IL_5D0B_0015D0B0.28310Isolated non-canonical cWW pairFRNA (17-mer)A37A38U39*A31C32U33cWWcWWcWW
143 IL_4V8Q_1884V8Q0.34820BY SsrAU56U57G58*C20A21G22ncWWncWWcWW
144 IL_4V84_0714V840.34580AVRNA (34-MER)G6192U6193C6194*G6183A6184U6185ncWWcWWncWWcWW
145 IL_1N33_0701N330.30950Z+YA-SITE MESSENGER RNA FRAGMENTU1U2U3*G34G35A36cWWncWWacWW
146 IL_4AOB_0054AOB0.36000Isolated non-canonical cWW pairA SAM-I riboswitchC78G79U80*G71A72G73cWWncWWcWW
147 IL_353D_001353D0.37560B+ARNA (12-mer)U15G16C17*G8U9G10cWWncWWacWW
148 IL_8VTW_0338VTW0.37870Isolated non-canonical cWW pair1A LSU rRNAU963C964C965*G952A953G954cWWcWWcWW
149 IL_7A0S_0317A0S0.42300Isolated non-canonical cWW pairX LSU rRNAU974C975C976*G963A964G965cWWcWWcWW
150 IL_8E0F_0028E0F0.40450Isolated non-canonical cWW pairC+DRNA (32-mer)G14A15G16*C17C18C19cWWcWWcWW
151 IL_8E4X_0018E4X0.43650Isolated non-canonical cWW pairC+DRNA (32-mer)G14A15G16*C17C18C19cWWcWWcWW
152 IL_5C5W_0025C5W0.45240Isolated non-canonical cWW pairARNA (19-mer)U9||AC10||AA11||A*U9||A||5_556C10||A||5_556A11||A||5_556cWWcWW
153 IL_7ECK_0137ECK0.46320Isolated non-canonical cWW pairJ+IDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A8A9U10*A3C4U5cWWncWWacWW
154 IL_7ECK_0157ECK0.42750Isolated non-canonical cWW pairI+JDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A8A9U10*A3C4U5ncWWncWWacWW
155 IL_7ECN_0017ECN0.47260Isolated non-canonical cWW pairB+ARNA (12-mer)G8A9C10*G3C4C5cWWcWW
156 IL_7ECN_0027ECN0.54710Isolated non-canonical cWW pairA+BRNA (12-mer)G8A9C10*G3C4C5cWWcWW
157 IL_5H1K_0015H1K0.59760Isolated non-canonical cWW pairC+DU4 snRNA (13-mer)G7A8C9*G7A8C9cWWcWW
158 IL_4V88_4194V880.51160Isolated non-canonical cWW pairA6 SSU rRNAC646G647G648*C686G687G688cWWcWW
159 IL_7VFT_0037VFT0.50820Isolated non-canonical cWW pairARNA (23-mer)C11A12G13*C11||||12_555A12||||12_555G13||||12_555cWWcWW
160 IL_4J50_0024J500.48790Isolated non-canonical cWW pairA+BRNA (19-mer)C10A11G12*C10A11G12cWWcWW
161 IL_8C3A_4748C3A0.51790Isolated non-canonical cWW pairCM SSU rRNAU1637A1638C1639*G1735A1736A1737cWWncWwcWW
162 IL_5ED1_0025ED10.42040Isolated non-canonical cWW pairB+CRNA (23-mer)G13A14C15*G9A10C11cWWcWwcWW
163 IL_5UNE_0035UNE0.40180Isolated non-canonical cWW pairB+ARNA (47-MER)G31G32C33*G12G13C14cWWcWW
164 IL_5UNE_0075UNE0.41220Isolated non-canonical cWW pairA+BRNA (47-MER)G31G32C33*G12G13C14cWWncWW
165 IL_4V88_4674V880.37800Isolated non-canonical cWW pairA6 SSU rRNAU1650A1651C1652*G1748A1749A1750cWWcWwcWW
166 IL_8D29_0018D290.38870Isolated non-canonical cWW pairCRNA (34-MER)G4A5U6*A29G30C31cWWcWWncWW
167 IL_4M4O_0024M4O0.33090Isolated non-canonical cWW pairBRNA (59-MER)G46A47C48*G12G13C14cWWcWWcWW
168 IL_8C3A_0748C3A0.28340Isolated non-canonical cWW pair1 LSU rRNAG1782A1783C1784*G1657G1658C1659cWWcWWcWW
169 IL_2R8S_0012R8S0.31330Isolated non-canonical cWW pairRP4-P6 RNA RIBOZYME DOMAING110G111G112*C208A210C211cWWcWWcWW
170 IL_5TBW_0685TBW0.28960Isolated non-canonical cWW pair1 LSU rRNAG1786A1787C1788*G1661G1662C1663cWWcWWcWW
171 IL_4V88_4724V880.28830Isolated non-canonical cWW pairA6 SSU rRNAG1727A1728C1729*G1672G1673C1674cWWcWWcWW
172 IL_3IVK_0023IVK0.34430Isolated non-canonical cWW pairMclass I ligase productA102A103C104*G87G88U89cWWcWWcWWncWW
173 IL_3HHN_0043HHN0.32650Isolated non-canonical cWW pairEClass I ligase ribozyme, self-ligation productA102A103C104*G87G88U89cWWcWWcWW
174 IL_5TBW_1275TBW0.34560Isolated non-canonical cWW pair1 LSU rRNAC3233A3234C3235*G3252G3253G3254cWWcWWcWW
175 IL_3DIL_0063DIL0.36000Isolated non-canonical cWW pairARNA (174-MER)G115G116G117*C137A138C139cWWcWWcWW
176 IL_3D0U_0063D0U0.33970Isolated non-canonical cWW pairALysine Riboswitch RNAG112G113G114*C134A135C136cWWcWWcWW
177 IL_5MSF_0015MSF0.29561Isolated non-canonical cWW pairRRNA (18-mer)C13||||P_1A14||||P_1C15||||P_1*G3||||P_1G4||||P_1G6||||P_1cWWcWWcWW
178 IL_8C3A_1498C3A0.38391Isolated non-canonical cWW pair3 5S rRNAC94A95U96*A84G85G87cWWcWWcWW
179 IL_5TBW_3785TBW0.42041Isolated non-canonical cWW pairAS 5S rRNAC94A95U96*A84G85G87cWWcWWcWW
180 IL_4R4V_0064R4V0.39312Isolated non-canonical cWW pairAVS ribozyme RNAG724A725C726*G749G752C753cWWcWWcWW
181 IL_6CZR_1186CZR0.41050Isolated non-canonical cWW pair1a SSU rRNAC68G69G70*C94A95G96cWWncWWcWW
182 IL_4LFB_0064LFB0.47490Isolated non-canonical cWW pairA SSU rRNAC67G68G69*C99A101G102cWWcWWcWW
183 IL_5J7L_0615J7L0.45740Isolated non-canonical cWW pairAA SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
184 IL_4LFB_0594LFB0.50710Isolated non-canonical cWW pairA SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
185 IL_5TBW_0425TBW0.45060Isolated non-canonical cWW pair1 LSU rRNAU1039A1040U1041*A1009G1010A1011cWWcWWcWW
186 IL_8C3A_0458C3A0.43390Isolated non-canonical cWW pair1 LSU rRNAU1035A1036U1037*A1005G1006A1007cWWcWWcWW
187 IL_8C3A_4598C3A0.49040Isolated non-canonical cWW pairCM SSU rRNAC1308G1309A1310*U1275G1276G1277cWWcWW
188 IL_7LYF_0027LYF0.46910Isolated non-canonical cWW pairADengue virus SLAU46G47G48*C84A85A86cWWncWWncWW
189 IL_5UNE_0045UNE0.52630Isolated non-canonical cWW pairA+BRNA (47-MER)U16A17G18*C27A28G29cWWcWwcWW
190 IL_5ZTM_0015ZTM0.57620Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2U118A119G120*C162C163G164cWWncWWcWW
191 IL_364D_004364D0.61240Self complementaryC+BRNA (31-mer)U95G96C97*G79U80G81cWWncWWcWW
192 IL_8C3A_4358C3A0.46510CM SSU rRNAG830G831A832*U810U811C812cWWcWW
193 IL_1NBS_0061NBS0.49580B RNase P class BG125G126C127*G116U117C118cWWncWWcWW
194 IL_8C3A_0698C3A0.509201 LSU rRNAC1559U1560U1561*A1570G1571G1572cWWncWWacWW
195 IL_7VYX_0017VYX0.42620Isolated non-canonical cWW pairCsgRNAG11A12C13*G53C54C55cWWncWWancWW
196 IL_7ECO_0067ECO0.40760Isolated non-canonical cWW pairF+ERNA (12-mer)G3U4C5*G8U9C10cWWcWW
197 IL_7ECO_0057ECO0.40870Isolated non-canonical cWW pairE+FRNA (12-mer)G3U4C5*G8U9C10cWWcWW
198 IL_4KNQ_0034KNQ0.41790Isolated non-canonical cWW pairBRNA (20-mer)C210C211G212*C210||||4_555C211||||4_555G212||||4_555cWWcWW
199 IL_4JGN_0034JGN0.36660Isolated non-canonical cWW pairERNA (20-mer)C511U512G513*C511||||4_555U512||||4_555G513||||4_555cWWncwWcWW
200 IL_4J39_0014J390.40810Isolated non-canonical cWW pairBRNA (19-mer)G9||||4_555C10||||4_555C11||||4_555*G9C10C11cWWcWW
201 IL_1ZH5_0011ZH50.37860Isolated non-canonical cWW pairD+CRNA (9-mer)C3U4G5*C3U4G5cWWncWwcWW
202 IL_5AY2_0015AY20.36520Isolated non-canonical cWW pairA+BRNA (12-mer)A3C4U5*A8C9U10cWWcWW
203 IL_5AY2_0035AY20.37340Isolated non-canonical cWW pairB+ARNA (12-mer)A3C4U5*A8C9U10cWWcWW
204 IL_7OFZ_0017OFZ0.32410Isolated non-canonical cWW pairCRNA (19-mer)C9||||7_555C10||||7_555G11||||7_555*C9C10G11cWWcWW
205 IL_7ZLQ_0017ZLQ0.31510Isolated non-canonical cWW pairCRNA (13-mer)G5C6C7*G5||||8_555C6||||8_555C7||||8_555cWWcWW
206 IL_7OFW_0017OFW0.28910Isolated non-canonical cWW pairCRNA (18-mer)C9C10G11*C9||||7_555C10||||7_555G11||||7_555cWWcWW
207 IL_3SZX_0023SZX0.28260Isolated non-canonical cWW pairA+BRNA (19-mer)C10U11G12*C10U11G12cWWncWwcWW
208 IL_4NGF_0024NGF0.27440Isolated non-canonical cWW pairH+GRNA (17-mer)G7U8C9*G7U8C9cWWncWwcWW
209 IL_4E48_0064E480.29450Isolated non-canonical cWW pairA+BRNA (20-mer)C17U18G19*C22U23G24cWWncWwcWW
210 IL_4KNQ_0024KNQ0.26530Isolated non-canonical cWW pairBRNA (20-mer)C213||||4_555C214||||4_555G215||||4_555*C207C208G209cWWcWW
211 IL_4KNQ_0044KNQ0.26530Isolated non-canonical cWW pairBRNA (20-mer)C213C214G215*C207||||4_555C208||||4_555G209||||4_555cWWcWW
212 IL_4JGN_0024JGN0.29890Isolated non-canonical cWW pairERNA (20-mer)C514||||4_555U515||||4_555G516||||4_555*C508U509G510cWWncWwcWW
213 IL_4JGN_0044JGN0.29890Isolated non-canonical cWW pairERNA (20-mer)C514U515G516*C508||||4_555U509||||4_555G510||||4_555cWWncWwcWW
214 IL_5CCB_0015CCB0.28540Isolated non-canonical cWW pairN tRNAA37A38U39*A31C32U33cWWcWWcWW
215 IL_3MEI_0023MEI0.26960Isolated non-canonical cWW pairA+BRNA (23-mer)G8C9C10*G13C14C15cWWncBWcWW
216 IL_1YZ9_0021YZ90.27940Isolated non-canonical cWW pairE+FRNA (11-mer)A4C5U6*A15C16U17cWWncBWcWW
217 IL_1YZ9_0011YZ90.30890Isolated non-canonical cWW pairD+CRNA (11-mer)A15C16U17*A4C5U6cWWncBWcWW
218 IL_4P3T_0054P3T0.30091Isolated non-canonical cWW pairA+BRNA (23-mer)G16A18G19*C30C31C32cWWcWWcWW
219 IL_6IA2_0046IA20.33810Isolated non-canonical cWW pairA+BRNA (19-mer)G11A12G13*C7C8C9cWWcWWcWW
220 IL_1Z7F_0021Z7F0.28920Isolated non-canonical cWW pairARNA (16-mer)A10A11U12*A5||||6_765C6||||6_765U7||||6_765cWWcWWcWW
221 IL_6OL3_0026OL30.30250Isolated non-canonical cWW pairC VA RNAG53A54C55*G78C79C80cWWcWWcWW
222 IL_8C3A_0858C3A0.27540Isolated non-canonical cWW pair1 LSU rRNAA2084A2085C2086*G1936C1937U1938cWWcWWcWW
223 IL_8C3A_4278C3A0.26470Isolated non-canonical cWW pairCM SSU rRNAA958A959C960*G622C623U624cWWcWWcWW
224 IL_4V88_4174V880.29180Isolated non-canonical cWW pairA6 SSU rRNAA973A974C975*G624C625U626cWWcWWcWW
225 IL_5Y85_0065Y850.27480Isolated non-canonical cWW pairC+DRNA (18-mer) + DNA/RNA (50-MER)G13A14C15*G4C5C6cWWcWWcWW
226 IL_1U9S_0071U9S0.21670Isolated non-canonical cWW pairARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
227 IL_5AOX_0015AOX0.19310Isolated non-canonical cWW pairCALU JO CONSENSUS RNAC18A19C20*G9C10G11cWWcWWcWW
228 IL_1UN6_0051UN60.24200Isolated non-canonical cWW pairF5S RIBOSOMAL RNAC95U96G97*C79U80G81cWWncWwcWW
229 IL_4E48_0044E480.22790Isolated non-canonical cWW pairA+BRNA (20-mer)C11U12G13*C28U29G30cWWncWwcWW
230 IL_4E48_0014E480.22340Isolated non-canonical cWW pairB+ARNA (20-mer)C37U38G39*C2U3G4cWWcWW
231 IL_4E48_0024E480.22870Isolated non-canonical cWW pairA+BRNA (20-mer)C5U6G7*C34U35G36cWWcWW
232 IL_4E48_0034E480.26350Isolated non-canonical cWW pairB+ARNA (20-mer)C31U32G33*C8U9G10cWWcWW
233 IL_3SZX_0013SZX0.25610Isolated non-canonical cWW pairB+ARNA (19-mer)C13U14G15*C7U8G9cWWcWW
234 IL_3GM7_0063GM70.28990Isolated non-canonical cWW pairH+GRNA (18-mer)C1U2G3*C16U17G18cWWncWwcWW
235 IL_5VCI_0025VCI0.25640Isolated non-canonical cWW pairA+BRNA (22-mer) + RNA (12-mer)C4U5G6*C7U8G9cWWncWwcWW
236 IL_5MWI_0025MWI0.24020Isolated non-canonical cWW pairARNA G(CUG)8C duplexC5U6G7*C20||||4_555U21||||4_555G22||||4_555cWWcWW
237 IL_5MWI_0075MWI0.24020Isolated non-canonical cWW pairARNA G(CUG)8C duplexC5||||4_555U6||||4_555G7||||4_555*C20U21G22cWWcWW
238 IL_5MWI_0045MWI0.27870Isolated non-canonical cWW pairARNA G(CUG)8C duplexC11U12||AG13*C14||||4_555U15||A||4_555G16||||4_555cWWcWW
239 IL_5MWI_0055MWI0.27870Isolated non-canonical cWW pairARNA G(CUG)8C duplexC11||||4_555U12||A||4_555G13||||4_555*C14U15||AG16cWWcWW
240 IL_3GM7_0053GM70.31060Isolated non-canonical cWW pairH+GRNA (18-mer)C4U5G6*C13U14G15cWWcWW
241 IL_3GM7_0033GM70.27050Isolated non-canonical cWW pairG+HRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
242 IL_3GM7_0043GM70.23160Isolated non-canonical cWW pairH+GRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
243 IL_3GM7_0023GM70.25640Isolated non-canonical cWW pairH+GRNA (18-mer)C13U14G15*C4U5G6cWWcWW
244 IL_4E59_0014E590.25630Isolated non-canonical cWW pairA+BRNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncBWcWW
245 IL_8SSW_0028SSW0.23100C+DRNA (28-MER)A8U9U10*A17G18U19cWWncWWacWW
246 IL_4WF9_0834WF90.21620Isolated non-canonical cWW pairX LSU rRNAC2111C2112U2113*A2260A2261G2262cWWncWWacWW
247 IL_4V9F_1054V9F0.23820Isolated non-canonical cWW pair9 5S rRNAC72A73G74*C107C108G109cWWcWWcWW
248 IL_1KFO_0021KFO0.29810Isolated non-canonical cWW pairARNA (19-mer)G11||||8_555A12||||8_555G13||||8_555*C6C7U8cWWcWWcWW
249 IL_1KFO_0031KFO0.29810Isolated non-canonical cWW pairARNA (19-mer)G11A12G13*C6||||8_555C7||||8_555U8||||8_555cWWcWWcWW
250 IL_6IA2_0016IA20.35770Isolated non-canonical cWW pairA+BRNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
251 IL_1M5K_0041M5K0.38200Isolated cWH basepairBRNA HAIRPIN RIBOZYMEG72G73G74*C79U80U81ncWWcWW
252 IL_7Y2B_0037Y2B0.36070Isolated non-canonical cWW pairSRNA (13-mer)C3||||5_555U4||||5_555G5||||5_555*C9U10G11cWWcWW
253 IL_7Y2B_0017Y2B0.36070Isolated non-canonical cWW pairSRNA (13-mer)C3U4G5*C9||||5_555U10||||5_555G11||||5_555cWWcWW
254 IL_5TBW_1125TBW0.33170Isolated non-canonical cWW pair1 LSU rRNAG2918A2919U2920*A2926C2927C2928cWWcWWcWW
255 IL_8C3A_1208C3A0.29960Isolated non-canonical cWW pair1 LSU rRNAG2890A2891U2892*A2898C2899C2900cWWcWWcWW
256 IL_1RPU_0011RPU0.30210Isolated non-canonical cWW pairD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
257 IL_4WZM_0014WZM0.28320Isolated cWH basepairB+CRNA template + RNA primerG906G907C908*G917C918C919cWWncHWcWW
258 IL_1WNE_0011WNE0.29370B+CRNA (8-mer) + RNA (5-mer)G906G907C908*G917C918C919cWWcWW
259 IL_7MLW_0067MLW0.26240Isolated tWW contactFGuanidine-I riboswitchC71U72U73*A92C93G94cWWcWW
260 IL_8C3A_4648C3A0.30320CM SSU rRNAU1338G1339C1340*G1353U1354A1355ncWWncWWcWW
261 IL_8C3A_0478C3A0.17580Isolated non-canonical cWW pair1 LSU rRNAG1083U1084G1085*C1065U1066U1067cWWncWwcWW
262 IL_5TBW_0445TBW0.22870Isolated non-canonical cWW pair1 LSU rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
263 IL_5TBW_1035TBW0.28100Isolated non-canonical cWW pair1 LSU rRNAG2824C2825U2826*G2863A2864U2865cWWcWWacWW
264 IL_4V88_4444V880.28250Isolated non-canonical cWW pairA6 SSU rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
265 IL_8C3A_4508C3A0.28250Isolated non-canonical cWW pairCM SSU rRNAG1450C1451G1452*C1158C1159U1160cWWncBWcWW
266 IL_4M4O_0014M4O0.31580Isolated non-canonical cWW pairBRNA (59-MER)A52C53G54*C6A7U8cWWcWWacWW
267 IL_5UNE_0065UNE0.34980Isolated non-canonical cWW pairB+ARNA (47-MER)U16A17G18*C27A28G29cWWcWwcWW
268 IL_4M6D_0114M6D0.32160Isolated non-canonical cWW pairHaptamerG46A47C48*G12G13C14ncWWcWWcWW
269 IL_8KAH_0038KAH0.28120A+IRNA (34-MER) + tracrRNAU31A32U33*G36U37A38ncWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC42
CUG*CUG37
CUG*CCG9
CCG*CCG8
GAG*CCC8
CUU*AUG7
AAU*ACU5
GAC*GCC5
GAC*GGC5
AUG*CCU4
GUU*AUC4
AAC*GCU4
ACU*ACU4
AUU*ACU3
UUG*CUG3
CUC*GUG3
UUU*AUA3
CAC*GCG3
GUC*GAU3
GCC*GUC3
GGG*CAC3
GCC*GCC3
GUG*CUC2
UUA*UUA2
UUU*AUG2
GUC*GUU2
AUU*AUU2
GGC*GUC2
AUU*AGU2
GGA*UUC2
CAU*GCG2
GCU*GUC2
GUC*GCC2
CUU*ACG2
UGC*GUG2
UCC*GAG2
UCA*UCA2
GAC*GAC2
CAG*CAG2
UAC*GAA2
GGC*GGC2
AAC*GGU2
CAU*AGUG2
CGG*CAG2
CAU*GGG2
UAU*AGA2
UAG*CAG2
GAG*CCU2
GAU*ACC2
GGC*GCC2
GUG*CUU2
GCG*CCU2
UUUG*CUG1
GUUU*AUC1
UUAUC*GUG1
GUUG*CUC1
GACG*CGC1
AUG*UUU1
UUA*UUG1
ACU*AUU1
GUA*UUC1
GGG*CUC1
ACG*CCU1
GUC*GGC1
UCG*CAA1
AAU*GUU1
GUU*AAU1
UGG*UGG1
UGC*GCG1
CUA*UCG1
CCC*GUG1
UUC*GGA1
UUG*CAG1
UUU*GGA1
CGU*GAG1
CGG*CGG1
GAU*AGC1
CAC*GGG1
CAC*GGAG1
GAC*GCAGC1
CGA*UGG1
UGG*CAA1
UAG*CCG1
CUU*AGG1
GAAG*CCC1
CCU*AAG1
CAG*CCG1
GGG*CUU1
UGC*GUA1
GCU*GAU1
ACG*CAU1
UAU*GUA1
Non-Watson-Crick part of the motif
SequenceCounts
U*U114
A*C33
U*C21
C*C20
A*G13
G*U9
A*A8
C*U7
G*A7
U*G6
C*A6
U*A5
G*G5
UU*U3
G*C3
A*U2
A*GU2
UAU*U1
AC*G1
A*GA1
A*CAG1
AA*C1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (242)
  • (20)
  • Isolated cWH basepair (3)
  • Self complementary (2)
  • Isolated tWW contact (1)
  • Other IL (1)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.32 | Max 0.88
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