Motif HL_01788.1 Version HL_01788.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_070 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | C | 3240 | G | 3241 | G | 3242 | A | 3243 | A | 3244 | A | 3245 | G | 3246 | G | 3247 | cWW | |
| 2 | HL_4CUV_070 | 4CUV | 0.3763 | 0 | 1 | 25S RRNA | C | 3240 | G | 3241 | G | 3242 | A | 3243 | A | 3244 | A | 3245 | G | 3246 | G | 3247 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAAAGG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAAG | 2 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_01788.1 | Only in the parent motif |
|---|---|---|---|
| HL_68733.1 Compare | HL_3U5H_070 | HL_4CUV_070 |
Children motifs
| Child motif | Common motif instances | Only in HL_01788.1 | Only in the child motif |
|---|---|---|---|
| HL_01788.2 Compare | HL_4CUV_070, HL_3U5H_070 | HL_1VWW_068 |
- Annotations
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.38 | Avg 0.19 | Max 0.38
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