Motif HL_01788.2 Version HL_01788.2 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_068 | 1VWW | 0.4255 | -2 | 5 | 28S ribosomal RNA | G | 4907 | G | 4908 | A | 4909 | G | 4910 | A | 4911 | G | 4912 | G | 4913 | C | 4914 | cWW |
| 2 | HL_4CUV_070 | 4CUV | 0.0000 | 0 | 1 | 25S RRNA | C | 3240 | G | 3241 | G | 3242 | A | 3243 | A | 3244 | A | 3245 | G | 3246 | G | 3247 | cWW |
| 3 | HL_3U5H_070 | 3U5H | 0.3763 | 0 | 5 | 25S rRNA | C | 3240 | G | 3241 | G | 3242 | A | 3243 | A | 3244 | A | 3245 | G | 3246 | G | 3247 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAAAGG | 2 |
| GGAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAAG | 2 |
| GAGA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_01788.2 | Only in the parent motif |
|---|---|---|---|
| HL_01788.1 Compare | HL_4CUV_070, HL_3U5H_070 | HL_1VWW_068 |
Children motifs
| Child motif | Common motif instances | Only in HL_01788.2 | Only in the child motif |
|---|---|---|---|
| HL_01788.3 Compare | HL_4CUV_070, HL_3U5H_070 | HL_1VWW_068 | HL_4W21_068 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.38 | Avg 0.31 | Max 0.59
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