Motif HL_11547.2 Version HL_11547.2 of this group appears in releases 1.1 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-7 | 1-8 | 2-6 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3R4F_002 | 3R4F | 0.4924 | 0 | A | pRNA | A | 51 | U | 52 | G | 53 | G | 54 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW | |||
| 2 | HL_4A1B_054 | 4A1B | 0.1352 | 1 | 1 | 26S RRNA | C | 2605 | U | 2606 | G | 2608 | G | 2609 | G | 2610 | C | 2611 | G | 2612 | G | 2613 | cWW | ||||
| 3 | HL_1S72_055 | 1S72 | 0.1304 | 1 | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | ||||
| 4 | HL_3U5H_055 | 3U5H | 0.1222 | 1 | 5 | 25S rRNA | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | ntWH | cWW | |||
| 5 | HL_4IOA_052 | 4IOA | 0.0000 | 1 | X | LSU rRNA | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | ||||
| 6 | HL_3V2F_051 | 3V2F | 0.0953 | 1 | A | 23S Ribosomal RNA | C | 2248 | U | 2249 | G | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | ntWH | cWW | ntSH | ||
| 7 | HL_2QBG_055 | 2QBG | 0.1200 | 1 | B | 23S rRNA | C | 2248 | U | 2249 | G | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW | ntSH | |||
| 8 | HL_3RKF_002 | 3RKF | 0.6398 | 0 | A | Guanine riboswitch | G | 46 | U | 47 | U | 48 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 6 |
| AUGGUUGU | 1 |
| GUUUCUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 6 |
| UGGUUG | 1 |
| UUUCUA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_11547.2 | Only in the parent motif |
|---|---|---|---|
| HL_11547.1 Compare | HL_3RKF_002, HL_3R4F_002, HL_1S72_055, HL_4A1B_054, HL_3V2F_051, HL_2QBG_055, HL_3U5H_055 | HL_4IOA_052 | HL_2ZJR_051 |
Children motifs
| Child motif | Common motif instances | Only in HL_11547.2 | Only in the child motif |
|---|---|---|---|
| HL_11547.3 Compare | HL_4IOA_052, HL_3RKF_002, HL_3R4F_002, HL_1S72_055, HL_4A1B_054, HL_3U5H_055, HL_2QBG_055 | HL_3V2F_051 | HL_4NVV_051 |
- Annotations
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.30 | Max 0.75
Coloring options: