Motif HL_11547.1 Version HL_11547.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3RKF_002 | 3RKF | 0.6584 | 0 | A | Purine riboswitch | G | 46 | U | 47 | U | 48 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | |
| 2 | HL_2QBG_055 | 2QBG | 0.1319 | 1 | B | LSU rRNA | C | 2248 | U | 2249 | G | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW | |
| 3 | HL_3V2F_051 | 3V2F | 0.1005 | 1 | A | LSU rRNA | C | 2248 | U | 2249 | G | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW | |
| 4 | HL_3U5H_055 | 3U5H | 0.0000 | 1 | 5 | LSU rRNA | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |
| 5 | HL_2ZJR_051 | 2ZJR | 0.1544 | 1 | X | LSU rRNA | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | |
| 6 | HL_1S72_055 | 1S72 | 0.1418 | 1 | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | |
| 7 | HL_4A1B_054 | 4A1B | 0.1456 | 1 | 1 | LSU rRNA | C | 2605 | U | 2606 | G | 2608 | G | 2609 | G | 2610 | C | 2611 | G | 2612 | G | 2613 | cWW | |
| 8 | HL_3R4F_002 | 3R4F | 0.4703 | 0 | A | pRNA | A | 51 | U | 52 | G | 53 | G | 54 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 6 |
| GUUUCUAC | 1 |
| AUGGUUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 6 |
| UUUCUA | 1 |
| UGGUUG | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_11547.1 | Only in the parent motif |
|---|---|---|---|
| HL_32207.1 Compare | HL_1S72_055, HL_2ZJR_051, HL_2QBG_055, HL_3R4F_002 | HL_3U5H_055, HL_3RKF_002, HL_3V2F_051, HL_4A1B_054 | HL_2GDI_001, HL_3PYO_062, HL_2A64_006, HL_3PYO_053, HL_3O58_055, HL_2ZJR_060, HL_2GDI_003, HL_2XZM_029, HL_2QBG_064, HL_1FJG_002, HL_3O58_064 |
Children motifs
| Child motif | Common motif instances | Only in HL_11547.1 | Only in the child motif |
|---|---|---|---|
| HL_11547.2 Compare | HL_3RKF_002, HL_3R4F_002, HL_1S72_055, HL_4A1B_054, HL_3V2F_051, HL_2QBG_055, HL_3U5H_055 | HL_2ZJR_051 | HL_4IOA_052 |
- Annotations
-
- (8)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.31 | Max 0.75
Coloring options: