Motif HL_19905.4 Version HL_19905.4 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-2 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_018 | 4BPP | 0.9525 | 2 | A | SSU rRNA | U | 761 | U | 763 | U | 764 | G | 766 | cWW | |
| 2 | HL_2QBG_045 | 2QBG | 0.5767 | 0 | B | LSU rRNA | C | 1728 | U | 1729 | C | 1730 | G | 1731 | ncSH | cWW |
| 3 | HL_2AW7_002 | 2AW7 | 0.0000 | 0 | A | SSU rRNA | C | 83 | U | 84 | U | 85 | G | 86 | cWW | |
| 4 | HL_4CUX_039 | 4CUX | 0.6422 | 2 | Z | CrPV IRES | U | 6105 | U | 6107 | U | 6108 | A | 6110 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUAG | 1 |
| CUCG | 1 |
| CUUG | 1 |
| UAUUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUA | 1 |
| UC | 1 |
| UU | 1 |
| AUUU | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_19905.4 | Only in the parent motif |
|---|---|---|---|
| HL_19905.3 Compare | HL_4BPP_018, HL_2AW7_002, HL_2QBG_045 | HL_4CUX_039 |
Children motifs
This motif has no children motifs.
Coloring options: