Motif HL_19905.3 Version HL_19905.3 of this group appears in releases 1.5 to 1.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	1-2	1-4
1	HL_4BPP_018	4BPP	0.9525	2	A	18S RRNA	U	761	U	763	U	764	G	766		cWW
2	HL_2AW7_002	2AW7	0.0000	0	A	16S ribosomal RNA	C	83	U	84	U	85	G	86		cWW
3	HL_2QBG_045	2QBG	0.5767	0	B	23S rRNA	C	1728	U	1729	C	1730	G	1731	ncSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUUUAG	1
CUUG	1
CUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUUA	1
UU	1
UC	1

Release history

Release	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14
Date	2013-08-03	2013-08-31	2013-09-28	2013-11-04	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29	2014-04-27
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_19905.3	Only in the parent motif
HL_19905.2 Compare	HL_2AW7_002, HL_2QBG_045	HL_4BPP_018	HL_2F8K_001

Children motifs

Child motif	Common motif instances	Only in HL_19905.3	Only in the child motif
HL_19905.4 Compare	HL_4BPP_018, HL_2AW7_002, HL_2QBG_045		HL_4CUX_039

Annotations: (3)
Basepair signature: cWW-R
Heat map statistics: Min 0.58 | Avg 0.56 | Max 0.98

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Coloring options: Nucleotide numbers

Motif HL_19905.3 Version HL_19905.3 of this group appears in releases 1.5 to 1.14 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_19905.3 Version HL_19905.3 of this group appears in releases 1.5 to 1.14

Download

Csv

Json