Motif HL_34108.2 Version HL_34108.2 of this group appears in releases 1.1 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_026 | 2QBG | 0.1596 | 2 | B | 23S rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 2 | HL_1S72_026 | 1S72 | 0.0000 | 2 | 0 | LSU rRNA | U | 919 | G | 921 | A | 922 | G | 924 | cWW | |
| 3 | HL_4IOA_024 | 4IOA | 0.1939 | 2 | X | LSU rRNA | U | 839 | G | 841 | A | 842 | G | 844 | cWW | |
| 4 | HL_3V2F_025 | 3V2F | 0.7677 | 2 | A | 23S Ribosomal RNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 5 | HL_4A1B_023 | 4A1B | 0.8138 | 2 | 1 | 26S RRNA | U | 983 | U | 985 | C | 986 | G | 988 | cWW | |
| 6 | HL_3U5H_022 | 3U5H | 1.0150 | 2 | 5 | 25S rRNA | C | 958 | U | 960 | C | 961 | G | 963 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAGG | 2 |
| UCGAAG | 1 |
| UUGAGG | 1 |
| UCUCAG | 1 |
| CCUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAG | 2 |
| CUCA | 2 |
| CGAA | 1 |
| UGAG | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_34108.2 | Only in the parent motif |
|---|---|---|---|
| HL_34108.1 Compare | HL_3V2F_025, HL_3U5H_022, HL_4A1B_023, HL_1S72_026, HL_2QBG_026 | HL_4IOA_024 | HL_2ZJR_024 |
Children motifs
| Child motif | Common motif instances | Only in HL_34108.2 | Only in the child motif |
|---|---|---|---|
| HL_34108.3 Compare | HL_1S72_026, HL_4IOA_024, HL_4A1B_023, HL_3U5H_022, HL_2QBG_026 | HL_3V2F_025 | HL_1VW3_017, HL_4NVV_024 |
Coloring options: