Motif HL_34108.1 Version HL_34108.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_022 | 3U5H | 0.8243 | 1 | 5 | LSU rRNA | C | 958 | C | 959 | U | 960 | C | 961 | G | 963 | cWW |
| 2 | HL_4A1B_023 | 4A1B | 0.6287 | 1 | 1 | LSU rRNA | U | 983 | C | 984 | U | 985 | C | 986 | G | 988 | cWW |
| 3 | HL_3V2F_025 | 3V2F | 0.6029 | 1 | A | LSU rRNA | U | 826 | U | 827 | U | 828 | A | 829 | G | 831 | cWW |
| 4 | HL_2QBG_026 | 2QBG | 0.1655 | 1 | B | LSU rRNA | U | 826 | U | 827 | U | 828 | A | 829 | G | 831 | cWW |
| 5 | HL_2ZJR_024 | 2ZJR | 0.0000 | 1 | X | LSU rRNA | U | 839 | U | 840 | G | 841 | A | 842 | G | 844 | cWW |
| 6 | HL_1S72_026 | 1S72 | 0.1814 | 1 | 0 | LSU rRNA | U | 919 | C | 920 | G | 921 | A | 922 | G | 924 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAGG | 2 |
| CCUCAG | 1 |
| UCUCAG | 1 |
| UUGAGG | 1 |
| UCGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCA | 2 |
| UUAG | 2 |
| UGAG | 1 |
| CGAA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_34108.1 | Only in the parent motif |
|---|---|---|---|
| HL_69451.1 Compare | HL_1S72_026, HL_2ZJR_024, HL_2QBG_026 | HL_3V2F_025, HL_3U5H_022, HL_4A1B_023 | HL_3O58_022, HL_3PYO_025 |
Children motifs
| Child motif | Common motif instances | Only in HL_34108.1 | Only in the child motif |
|---|---|---|---|
| HL_34108.2 Compare | HL_3V2F_025, HL_3U5H_022, HL_4A1B_023, HL_1S72_026, HL_2QBG_026 | HL_2ZJR_024 | HL_4IOA_024 |
Coloring options: