Motif HL_74284.1 Version HL_74284.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5WT1_002 | 5WT1 | 0.1542 | 5 | C | tRNA | A | 31 | C | 32 | A | 38 | U | 39 | cWW | ncWW | |
| 2 | HL_2ZZM_002 | 2ZZM | 0.0000 | 5 | B | RNA (84-MER) | G | 31 | C | 32 | A | 38 | C | 39 | cWW | ncWW | |
| 3 | HL_8C3A_038 | 8C3A | 0.3425 | 3 | 1 | LSU rRNA | G | 1715 | U | 1716 | U | 1720 | C | 1721 | cWW | cwW | |
| 4 | HL_5TBW_038 | 5TBW | 0.3866 | 3 | 1 | LSU rRNA | G | 1719 | U | 1720 | U | 1724 | C | 1725 | cWW | cwW | |
| 5 | HL_5TBW_012 | 5TBW | 0.3650 | 2 | 1 | LSU rRNA | C | 543 | C | 544 | G | 547 | G | 548 | ncWW | ||
| 6 | HL_8UO6_003 | 8UO6 | 0.4698 | 3 | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | A | 77 | A | 78 | U | 82 | U | 83 | cWW | ||
| 7 | HL_5U3G_001 | 5U3G | 0.6281 | 2 | B | Guanidine-I riboswitch | C | 18 | G | 19 | A | 22 | G | 23 | cWW | ||
| 8 | HL_5CCB_003 | 5CCB | 0.7981 | 5 | N | tRNA | G | 53 | U | 54 | G | 59 | C | 61 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUAUC | 2 |
| ACUGAAGAU | 1 |
| GCCUAGGAC | 1 |
| CCUCGG | 1 |
| AAUUAUU | 1 |
| CGAAAG | 1 |
| GUUCAAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUAU | 2 |
| CUGAAGA | 1 |
| CCUAGGA | 1 |
| CUCG | 1 |
| AUUAU | 1 |
| GAAA | 1 |
| UUCAAGU | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: