#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 41-42-3
1 HL_5WT1_0025WT10.15425C tRNAA31C32A38U39cWWncWW
2 HL_2ZZM_0022ZZM0.00005BRNA (84-MER)G31C32A38C39cWWncWW
3 HL_8C3A_0388C3A0.342531 LSU rRNAG1715U1716U1720C1721cWWcwW
4 HL_5TBW_0385TBW0.386631 LSU rRNAG1719U1720U1724C1725cWWcwW
5 HL_5TBW_0125TBW0.365021 LSU rRNAC543C544G547G548ncWW
6 HL_8UO6_0038UO60.46983AHIV-1 Rev Response Element Stem-Loop II with tRNA scaffoldA77A78U82U83cWW
7 HL_5U3G_0015U3G0.62812BGuanidine-I riboswitchC18G19A22G23cWW
8 HL_5CCB_0035CCB0.79815N tRNAG53U54G59C61cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUUAUC2
ACUGAAGAU1
GCCUAGGAC1
CCUCGG1
AAUUAUU1
CGAAAG1
GUUCAAGUC1
Non-Watson-Crick part of the motif
SequenceCounts
UUUAU2
CUGAAGA1
CCUAGGA1
CUCG1
AUUAU1
GAAA1
UUCAAGU1

Release history

Release3.88
Date2024-09-11
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (8)
  • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.12 | Avg 0.47 | Max 0.96
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